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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.365831 (22 seq.)
>A171001433
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
474573
474644
+
Gly
TCC
-
¡û
>A171001717
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
1142099
1142173
+
Gly
TCC
-
¡û
>A171004655
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
720844
720771
-
Gly
TCC
-
¡û
>A171004763
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
655477
655404
-
Gly
TCC
-
¡û
>A171006825
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
252324
252253
-
Gly
TCC
-
¡û
>WENV170784212
MCHG01000126
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
18441
18512
+
Gly
TCC
[ENA]
¢þ
>W1910228310
FNMU01000001
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
66544
66473
-
Gly
TCC
[ENA]
¡û
>W1910471799
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
573789
573718
-
Gly
TCC
[ENA]
¡û
>W1910569484
JJOW01000092
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
13727
13800
+
Gly
TCC
[ENA]
¡û
>W1910569575
JJOX01000091
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
13727
13800
+
Gly
TCC
[ENA]
¡û
>W1910569597
JJOY01000020
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
13727
13800
+
Gly
TCC
[ENA]
¡û
>W1910569651
JJOZ01000033
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
13727
13800
+
Gly
TCC
[ENA]
¡û
>W1910571572
JJQL01000015
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
65452
65525
+
Gly
TCC
[ENA]
¡û
>W1910572287
JJQY01000147
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
133231
133304
+
Gly
TCC
[ENA]
¡û
>W1910582968
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
436094
436165
+
Gly
TCC
[ENA]
¡û
>W1910672563
MCNQ01000016
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
40053
39981
-
Gly
TCC
[ENA]
¡û
>W1910694775
MDTP02000052
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
49640
49711
+
Gly
TCC
[ENA]
¡û
>W1911492143
OBDR01000011
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
23340
23412
+
Gly
TCC
[ENA]
¡û
>W1911633777
PVBU01000012
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
23585
23657
+
Gly
TCC
[ENA]
¡û
>W1911653220
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
669925
669854
-
Gly
TCC
[ENA]
¡û
>W1610919874
LSRU01000095
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
5481
5553
+
Gly
TCC
[ENA]
¡û
>W1611052520
MAFX01000057
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
32971
32899
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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