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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366050 (34 seq.)
>W1711083841
LSVG01000006
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
194332
194257
-
Ala
CGC
[ENA]
¡û
>W1711227801
LXVX01000034
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
48844
48919
+
Ala
CGC
[ENA]
¡û
>W1711642823
MPZQ01000001
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
700913
700988
+
Ala
CGC
[ENA]
¡û
>W1711642868
MPZR01000001
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
256434
256509
+
Ala
CGC
[ENA]
¡û
>W1711642956
MPZT01000001
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
731146
731221
+
Ala
CGC
[ENA]
¡û
>W1711643001
MPZU01000001
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
705749
705824
+
Ala
CGC
[ENA]
¡û
>W1711643046
MPZV01000001
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
812357
812432
+
Ala
CGC
[ENA]
¡û
>W1711947197
NBNX01000002
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
261849
261924
+
Ala
CGC
[ENA]
¡û
>W1711947233
NBNY01000001
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
1399823
1399898
+
Ala
CGC
[ENA]
¡û
>W1711947275
NBNZ01000001
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
701617
701692
+
Ala
CGC
[ENA]
¡û
>C171094373
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
1370633
1370558
-
Ala
CGC
-
¡û
>W141076351
ATDP01000097
Alphaproteobacteria
Sphingobium lactosutens DS20 [ATDP]
107291
107366
+
Ala
CGC
[ENA]
¡û
>W141191328
AYOY01000051
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
3580
3505
-
Ala
CGC
[ENA]
¡û
>WENV183729677
PJTR01000011
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
147207
147132
-
Ala
CGC
[ENA]
¢þ
>WENV183734283
PJTZ01001026
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
3151
3226
+
Ala
CGC
[ENA]
¢þ
>WENV183736969
PJUD01000138
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
15437
15512
+
Ala
CGC
[ENA]
¢þ
>WENV170193254
CEPH01039466
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
325
250
-
Ala
CGC
[ENA]
¢þ
>WENV170235985
CEQL01139592
[CEQL] marine metagenome genome assembly TARA_076_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
184
109
-
Ala
CGC
[ENA]
¢þ
>WENV170277673
CERQ01011852
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
855
930
+
Ala
CGC
[ENA]
¢þ
>WENV170812506
MDSW01184564
[MDSW] marine metagenome; seawater
7150
7225
+
Ala
CGC
[ENA]
¢þ
>WENV170890601
MDTD01012840
[MDTD] marine metagenome; seawater
31099
31174
+
Ala
CGC
[ENA]
¢þ
>C181047575
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
2122023
2122098
+
Ala
CGC
-
¡û
>C181089666
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
587852
587927
+
Ala
CGC
-
¡û
>W141520437
JGVR01000004
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
144578
144653
+
Ala
CGC
[ENA]
¡û
>C191063652
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
2484356
2484281
-
Ala
CGC
-
¡û
>C191103855
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
85879
85954
+
Ala
CGC
-
¡û
>C191163698
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
4151398
4151323
-
Ala
CGC
-
¡û
>W1911688279
QLJK01000001
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
167323
167248
-
Ala
CGC
[ENA]
¡û
>W1911696522
QMEJ01000005
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
204229
204304
+
Ala
CGC
[ENA]
¡û
>W1510941334
JFFT01000011
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
124259
124334
+
Ala
CGC
[ENA]
¡û
>W1610076460
BCYT01000004
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
130042
130117
+
Ala
CGC
[ENA]
¡û
>W1610922594
LSVG01000006
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
194332
194257
-
Ala
CGC
[ENA]
¡û
>W1611011765
LXVX01000034
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
48844
48919
+
Ala
CGC
[ENA]
¡û
>W1710074149
BCYT01000004
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
130042
130117
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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