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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366207 (60 seq.)
>W1711128868
LUTP01000023
Gammaproteobacteria
Lonsdalea iberica subsp. iberica [LUTP]
21568
21494
-
Gln
CTG
[ENA]
¡û
>W1711128870
LUTP01000023
Gammaproteobacteria
Lonsdalea iberica subsp. iberica [LUTP]
21364
21290
-
Gln
CTG
[ENA]
¡û
>W1711327277
MBJU01000065
Gammaproteobacteria
Photorhabdus temperata [MBJU]
65219
65293
+
Gln
CTG
[ENA]
¡û
>W1711853456
MYFJ01000089
Gammaproteobacteria
Photorhabdus luminescens [MYFJ]
47527
47453
-
Gln
CTG
[ENA]
¡û
>C022137
AP008232
Gammaproteobacteria
Sodalis glossinidius str. 'morsitans' [AP008232]
1371624
1371550
-
Gln
CTG
[Ensembl]
¡û
>WENV180042986
LQAH01000071
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3799
3725
-
Gln
TTG
[ENA]
¢þ
>W141254094
CBSU010000193
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Florida [CBSU]
18972
19046
+
Gln
CTG
[ENA]
¡û
>W141254244
CBSW010000308
Gammaproteobacteria
Xenorhabdus bovienii str. puntauvense [CBSW]
4429
4355
-
Gln
CTG
[ENA]
¡û
>W141461916
JFGV01000011
Gammaproteobacteria
Photorhabdus aegyptia BA1 [JFGV]
58505
58579
+
Gln
CTG
[ENA]
¡û
>C181203493
LN854557
Gammaproteobacteria
Sodalis glossinidius str. 'morsitans' [LN854557]
1420980
1420906
-
Gln
CTG
-
¡û
>C191088008
CP032329
Gammaproteobacteria
Xenorhabdus nematophila YL001 [CP032329]
682101
682027
-
Gln
CTG
-
¡û
>C191117849
CP034036
Gammaproteobacteria
Brenneria nigrifluens DSM 30175 = ATCC 13028 [CP034036]
3357819
3357893
+
Gln
CTG
-
¡û
>W141565250
JIBO01000007
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBO]
9399
9473
+
Gln
CTG
[ENA]
¡û
>W141565252
JIBO01000007
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBO]
9604
9678
+
Gln
CTG
[ENA]
¡û
>W141565320
JIBP01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBP]
410681
410607
-
Gln
CTG
[ENA]
¡û
>W141565322
JIBP01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBP]
410477
410403
-
Gln
CTG
[ENA]
¡û
>W141565386
JIBQ01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBQ]
410700
410626
-
Gln
CTG
[ENA]
¡û
>W141565388
JIBQ01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBQ]
410496
410422
-
Gln
CTG
[ENA]
¡û
>W141779163
JONO01000036
Gammaproteobacteria
Photorhabdus australis subsp. australis DSM 17609 [JONO]
47249
47175
-
Gln
CTG
[ENA]
¡û
>C09108343
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
3665717
3665791
+
Gln
CTG
[Ensembl]
¡û
>W1910751295
MJLY01000044
Gammaproteobacteria
Brenneria goodwinii FRB171 [MJLY]
25911
25985
+
Gln
CTG
[ENA]
¡û
>W1910918759
NIBS01000001
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
406497
406423
-
Gln
CTG
[ENA]
¡û
>W1910941348
NJCW01000026
Gammaproteobacteria
Xenorhabdus sp. KJ12.1 [NJCW]
34386
34460
+
Gln
CTG
[ENA]
¡û
>W1911237752
NSCD01000024
Gammaproteobacteria
Photorhabdus sp. S7-51 [NSCD]
46954
46880
-
Gln
CTG
[ENA]
¡û
>W1911237819
NSCE01000020
Gammaproteobacteria
Photorhabdus sp. S14-60 [NSCE]
46954
46880
-
Gln
CTG
[ENA]
¡û
>W1911237876
NSCF01000013
Gammaproteobacteria
Photorhabdus sp. S15-56 [NSCF]
46954
46880
-
Gln
CTG
[ENA]
¡û
>W1911238116
NSCI01000025
Gammaproteobacteria
Photorhabdus laumondii subsp. clarkei BOJ-47 [NSCI]
31496
31570
+
Gln
CTG
[ENA]
¡û
>W1911238249
NSCK01000020
Gammaproteobacteria
Photorhabdus sp. S9-53 [NSCK]
48692
48618
-
Gln
CTG
[ENA]
¡û
>W1911238319
NSCL01000021
Gammaproteobacteria
Photorhabdus sp. S8-52 [NSCL]
48692
48618
-
Gln
CTG
[ENA]
¡û
>W1911238370
NSCM01000009
Gammaproteobacteria
Photorhabdus bodei LJ24-63 [NSCM]
85458
85384
-
Gln
CTG
[ENA]
¡û
>W1911238422
NSCN01000002
Gammaproteobacteria
Photorhabdus sp. HUG-39 [NSCN]
201353
201279
-
Gln
CTG
[ENA]
¡û
>W1911632367
PUJX01000016
Gammaproteobacteria
Photorhabdus luminescens MEX47-22 [PUJX]
94748
94822
+
Gln
CTG
[ENA]
¡û
>W1911632422
PUJY01000010
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
48721
48647
-
Gln
CTG
[ENA]
¡û
>W1810181842
PJZF01000005
Gammaproteobacteria
Chimaeribacter californicus 2015Iso6 [PJZF]
197498
197424
-
Gln
CTG
[ENA]
¡û
>W1810181907
PJZG01000003
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2013Iso5 [PJZG]
193761
193687
-
Gln
CTG
[ENA]
¡û
>W1810181979
PJZH01000002
Gammaproteobacteria
Chimaeribacter coloradensis 2016Iso4 [PJZH]
379092
379018
-
Gln
CTG
[ENA]
¡û
>W1810182041
PJZI01000002
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 [PJZI]
78845
78919
+
Gln
CTG
[ENA]
¡û
>W1810182133
PJZJ01000013
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso2 [PJZJ]
61094
61020
-
Gln
CTG
[ENA]
¡û
>W1810339394
PUWT01000043
Gammaproteobacteria
Photorhabdus hindustanensis H1 [PUWT]
47278
47204
-
Gln
CTG
[ENA]
¡û
>W1810339530
PUWV01000034
Gammaproteobacteria
Photorhabdus luminescens H4 [PUWV]
47404
47330
-
Gln
CTG
[ENA]
¡û
>W1810339572
PUWW01000025
Gammaproteobacteria
Photorhabdus luminescens H5 [PUWW]
275
349
+
Gln
CTG
[ENA]
¡û
>W1810543471
QDKJ01000004
Gammaproteobacteria
Brenneria roseae subsp. americana LMG 27715 [QDKJ]
331729
331803
+
Gln
CTG
[ENA]
¡û
>W1810861745
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
4266893
4266967
+
Gln
CTG
[ENA]
¡û
>C151009259
CP006569
Gammaproteobacteria
Sodalis praecaptivus HS1 [CP006569]
3236707
3236781
+
Gln
CTG
[Ensembl]
¡û
>C151098350
FO818637
Gammaproteobacteria
Xenorhabdus bovienii CS03 [FO818637]
3392387
3392461
+
Gln
CTG
[Ensembl]
¡û
>C151103968
LN681227
Gammaproteobacteria
Xenorhabdus nematophila AN6/1 [LN681227]
1213538
1213464
-
Gln
CTG
[Ensembl]
¡û
>W1510059527
CCWM01000400
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
12990
12916
-
Gln
CTG
[ENA]
¡û
>W1510059549
CCWM01000469
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
12990
12916
-
Gln
CTG
[ENA]
¡û
>C10114335
FN667742
Gammaproteobacteria
Xenorhabdus nematophila ATCC 19061 [FN667742]
1213634
1213560
-
Gln
CTG
[Ensembl]
¡û
>C11116825
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
3665717
3665791
+
Gln
CTG
[Ensembl]
¡û
>W1511349391
JRLH01000012
Gammaproteobacteria
Candidatus Arsenophonus nilaparvatae str. Hangzhou of Nilaparvata lugens [JRLH]
45035
44961
-
Gln
CTG
[ENA]
¡û
>W1511401196
JTHJ02000193
Gammaproteobacteria
Photorhabdus luminescens NBAII HiPL101 [JTHJ]
26
100
+
Gln
CTG
[ENA]
¡û
>W1511512708
JXUR02000222
Gammaproteobacteria
Photorhabdus luminescens NBAII Hb105 [JXUR]
24937
24863
-
Gln
CTG
[ENA]
¡û
>W1511638084
LDNM01000072
Gammaproteobacteria
Xenorhabdus griffiniae BMMCB [LDNM]
22963
23037
+
Gln
CTG
[ENA]
¡û
>W11176223
AFWW01000010
Gammaproteobacteria
Brenneria sp. EniD312 [AFWW]
2159943
2160017
+
Gln
CTG
[ENA]
¡û
>C161109695
LT594522
Gammaproteobacteria
secondary endosymbiont of Trabutina mannipara [LT594522]
176670
176743
+
Gln
CTG
[Ensembl]
¡û
>W1610032522
AZAB02000235
Gammaproteobacteria
Photorhabdus luminescens NBAII H75HRPL105 [AZAB]
25
99
+
Gln
CTG
[ENA]
¡û
>W1710532925
FNQS01000001
Gammaproteobacteria
Lonsdalea quercina [FNQS]
291920
291994
+
Gln
CTG
[ENA]
¡û
>W1710532927
FNQS01000001
Gammaproteobacteria
Lonsdalea quercina [FNQS]
292125
292199
+
Gln
CTG
[ENA]
¡û
>W1710571001
FOVO01000006
Gammaproteobacteria
Xenorhabdus japonica [FOVO]
93175
93249
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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