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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366335 (65 seq.)
>W1710896357
LNHJ01000085
Gammaproteobacteria
Klebsiella pneumoniae [LNHJ]
2971
3046
+
Ala
GGC
[ENA]
¡û
>W1710897175
LNHT01000099
Gammaproteobacteria
Proteus mirabilis [LNHT]
77567
77492
-
Ala
GGC
[ENA]
¡û
>W1711005407
LQNO01000001
Gammaproteobacteria
Proteus mirabilis [LQNO]
513527
513602
+
Ala
GGC
[ENA]
¡û
>W1711071378
LSGS01000082
Gammaproteobacteria
Proteus mirabilis [LSGS]
2179
2254
+
Ala
GGC
[ENA]
¡û
>W1711115631
LUAI01000041
Gammaproteobacteria
Proteus sp. HMSC14B05 [LUAI]
2180
2255
+
Ala
GGC
[ENA]
¡û
>W1711193423
LWUM01000147
Gammaproteobacteria
Proteus mirabilis [LWUM]
102818
102743
-
Ala
GGC
[ENA]
¡û
>C171120869
CP021550
Gammaproteobacteria
Proteus mirabilis AR_0159 [CP021550]
3847753
3847678
-
Ala
GGC
-
¡û
>W131055279
ANBT01000002
Gammaproteobacteria
Proteus mirabilis C05028 [ANBT]
315337
315262
-
Ala
GGC
[ENA]
¡û
>W141043829
AMGT01000026
Gammaproteobacteria
Proteus mirabilis WGLW6 [AMGT]
2123
2198
+
Ala
GGC
[ENA]
¡û
>W141167845
AXUL01000089
Gammaproteobacteria
Klebsiella pneumoniae 909957 [AXUL]
64655
64580
-
Ala
GGC
[ENA]
¡û
>C181023294
CP017082
Gammaproteobacteria
Proteus mirabilis T21 [CP017082]
2665737
2665662
-
Ala
GGC
-
¡û
>C181023371
CP017085
Gammaproteobacteria
Proteus mirabilis T18 [CP017085]
2976372
2976447
+
Ala
GGC
-
¡û
>C181126601
CP026062
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [CP026062]
1309936
1309861
-
Ala
GGC
-
¡û
>C181163015
CP028169
Gammaproteobacteria
Salmonella enterica CFSAN064034 [CP028169]
3383997
3384072
+
Ala
GGC
-
¡û
>C191119002
CP034090
Gammaproteobacteria
Proteus mirabilis PmSC1111 [CP034090]
699388
699313
-
Ala
GGC
-
¡û
>C191119048
CP034091
Gammaproteobacteria
Proteus mirabilis PmBC1123 [CP034091]
2484381
2484456
+
Ala
GGC
-
¡û
>C191199977
LR134205
Gammaproteobacteria
Proteus mirabilis NCTC4199 [LR134205]
2483429
2483504
+
Ala
GGC
-
¡û
>W141790077
JOVJ01000005
Gammaproteobacteria
Proteus mirabilis [JOVJ]
586398
586473
+
Ala
GGC
[ENA]
¡û
>W09127697
ACLE01000032
Gammaproteobacteria
Proteus mirabilis ATCC 29906 [ACLE]
54413
54488
+
Ala
GGC
[ENA]
¡û
>C141003311
CP004022
Gammaproteobacteria
Proteus mirabilis BB2000 [CP004022]
2082531
2082606
+
Ala
GGC
[Ensembl]
¡û
>W1911137217
NOWA01000010
Gammaproteobacteria
Proteus mirabilis PM187 [NOWA]
108248
108173
-
Ala
GGC
[ENA]
¡û
>W1911770185
QXIN01000024
Gammaproteobacteria
Proteus mirabilis PMWJ [QXIN]
95786
95711
-
Ala
GGC
[ENA]
¡û
>W1810011599
BGKS01000012
Gammaproteobacteria
Proteus mirabilis TUM11567 [BGKS]
3612
3687
+
Ala
GGC
[ENA]
¡û
>W1810011676
BGKT01000005
Gammaproteobacteria
Proteus mirabilis TUM11568 [BGKT]
129686
129611
-
Ala
GGC
[ENA]
¡û
>W1810188979
PKIT01000001
Gammaproteobacteria
Proteus mirabilis UMB0315 [PKIT]
1567601
1567676
+
Ala
GGC
[ENA]
¡û
>W1810335210
PURY01000003
Gammaproteobacteria
Proteus mirabilis GER_MD10_1505_Pmi_049 [PURY]
375892
375817
-
Ala
GGC
[ENA]
¡û
>W1810340570
PUXR01000017
Gammaproteobacteria
Proteus mirabilis PmPHI [PUXR]
9884
9959
+
Ala
GGC
[ENA]
¡û
>W1810534965
QDAK01000002
Gammaproteobacteria
Proteus mirabilis AR_0377 [QDAK]
298655
298580
-
Ala
GGC
[ENA]
¡û
>W1810626545
QHLF01000001
Gammaproteobacteria
Proteus mirabilis 11985-2-3 [QHLF]
302540
302615
+
Ala
GGC
[ENA]
¡û
>SRA1016551
SRR023846.560576
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
226
151
-
Ala
GGC
[SRA]
>C151096974
CP012674
Gammaproteobacteria
Proteus mirabilis CYPM1 [CP012674]
2437563
2437638
+
Ala
GGC
-
¡û
>W1510038444
CCIC01000017
Gammaproteobacteria
Klebsiella pneumoniae [CCIC]
140839
140764
-
Ala
GGC
[ENA]
¡û
>W1511393964
JTAW01000004
Gammaproteobacteria
Proteus mirabilis FDAARGOS_85 [JTAW]
938118
938193
+
Ala
GGC
[ENA]
¡û
>W1511395683
JTBP01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [JTBP]
1017897
1017972
+
Ala
GGC
[ENA]
¡û
>W1511446701
JUXK01000093
Gammaproteobacteria
Proteus mirabilis 68_PMIR [JUXK]
138228
138153
-
Ala
GGC
[ENA]
¡û
>W1511447580
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2067
2142
+
Ala
GGC
[ENA]
¡û
>W1511447581
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2169
2244
+
Ala
GGC
[ENA]
¡û
>W1511447582
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2271
2346
+
Ala
GGC
[ENA]
¡û
>W1511447583
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2373
2448
+
Ala
GGC
[ENA]
¡û
>W1511447584
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2475
2550
+
Ala
GGC
[ENA]
¡û
>W1511447585
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2577
2652
+
Ala
GGC
[ENA]
¡û
>W1511447586
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2679
2754
+
Ala
GGC
[ENA]
¡û
>W1511447587
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2781
2856
+
Ala
GGC
[ENA]
¡û
>W1511447588
JUYT01000104
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
2883
2958
+
Ala
GGC
[ENA]
¡û
>W1511456927
JVHX01000043
Gammaproteobacteria
Proteus mirabilis 418_PMIR [JVHX]
2196
2271
+
Ala
GGC
[ENA]
¡û
>W1511474561
JWBY01000015
Gammaproteobacteria
Proteus mirabilis 1134_PMIR [JWBY]
2090
2165
+
Ala
GGC
[ENA]
¡û
>W1610082525
BDFL01000046
Gammaproteobacteria
Citrobacter freundii [BDFL]
31012
30936
-
Ala
GGC
[ENA]
¡û
>W1610540658
JSUP01000054
Gammaproteobacteria
Proteus mirabilis [JSUP]
2556
2631
+
Ala
GGC
[ENA]
¡û
>W1610540659
JSUP01000054
Gammaproteobacteria
Proteus mirabilis [JSUP]
2658
2733
+
Ala
GGC
[ENA]
¡û
>W1610575856
LAGU01000004
Gammaproteobacteria
Proteus mirabilis [LAGU]
105140
105065
-
Ala
GGC
[ENA]
¡û
>W1610622697
LHSZ01000049
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Johannesburg str. [LHSZ]
19787
19711
-
Ala
GGC
[ENA]
¡û
>W1610638413
LIXQ01000667
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport str. S09097 [LIXQ]
4196
4120
-
Ala
GGC
[ENA]
¡û
>W1610756761
LNHJ01000085
Gammaproteobacteria
Klebsiella pneumoniae [LNHJ]
2971
3046
+
Ala
GGC
[ENA]
¡û
>W1610757579
LNHT01000099
Gammaproteobacteria
Proteus mirabilis [LNHT]
77567
77492
-
Ala
GGC
[ENA]
¡û
>W1610856057
LQNO01000001
Gammaproteobacteria
Proteus mirabilis [LQNO]
513527
513602
+
Ala
GGC
[ENA]
¡û
>W1610910638
LSGS01000082
Gammaproteobacteria
Proteus mirabilis [LSGS]
2179
2254
+
Ala
GGC
[ENA]
¡û
>W1610994138
LWUM01000147
Gammaproteobacteria
Proteus mirabilis [LWUM]
102818
102743
-
Ala
GGC
[ENA]
¡û
>WENV082835
BAAW01003364
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
1871
1795
-
Ala
GGC
[ENA]
>W1710081525
BDFL01000046
Gammaproteobacteria
Citrobacter freundii [BDFL]
31012
30936
-
Ala
GGC
[ENA]
¡û
>W1710563218
FOPN01000001
Gammaproteobacteria
Proteus mirabilis [FOPN]
389223
389148
-
Ala
GGC
[ENA]
¡û
>W1710643679
JSUP01000054
Gammaproteobacteria
Proteus mirabilis [JSUP]
2556
2631
+
Ala
GGC
[ENA]
¡û
>W1710643680
JSUP01000054
Gammaproteobacteria
Proteus mirabilis [JSUP]
2658
2733
+
Ala
GGC
[ENA]
¡û
>W1710694120
LAGU01000004
Gammaproteobacteria
Proteus mirabilis [LAGU]
105140
105065
-
Ala
GGC
[ENA]
¡û
>W1710753624
LHSZ01000049
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Johannesburg str. [LHSZ]
19787
19711
-
Ala
GGC
[ENA]
¡û
>W1710774244
LIXQ01000667
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport str. S09097 [LIXQ]
4196
4120
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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