This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366548 (60 seq.)
>W1710853585
LLWU01000173
Gammaproteobacteria
Klebsiella pneumoniae [LLWU]
68266
68338
+
Arg
CCT
[ENA]
¡û
>W1710853618
LLWV01000014
Gammaproteobacteria
Klebsiella pneumoniae [LLWV]
75531
75459
-
Arg
CCT
[ENA]
¡û
>W1710853818
LLWX01000046
Gammaproteobacteria
Klebsiella pneumoniae [LLWX]
198738
198666
-
Arg
CCT
[ENA]
¡û
>W1711184189
LWLR01000001
Gammaproteobacteria
Pantoea sp. OXWO6B1 [LWLR]
3864079
3864153
+
Arg
CCT
[ENA]
¡û
>W1711338935
MBTW01000021
Gammaproteobacteria
Citrobacter koseri [MBTW]
57585
57511
-
Arg
CCT
[ENA]
¡û
>W1711437638
MIPP01000041
Gammaproteobacteria
Pantoea eucrina [MIPP]
15303
15377
+
Arg
CCT
[ENA]
¡û
>W1711513298
MLFP01000011
Gammaproteobacteria
Pantoea rodasii [MLFP]
55921
55995
+
Arg
CCT
[ENA]
¡û
>W1711738799
MUBJ01000018
Gammaproteobacteria
Xenorhabdus vietnamensis [MUBJ]
80253
80327
+
Arg
CCT
[ENA]
¡û
>W1711888717
MYYV01000011
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 44:z4 [MYYV]
36972
36898
-
Arg
CCT
[ENA]
¡û
>W1711898535
MZEA01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar 4 [MZEA]
194733
194807
+
Arg
CCT
[ENA]
¡û
>W1712024101
NFBI01000051
Gammaproteobacteria
Klebsiella pneumoniae [NFBI]
62574
62648
+
Arg
CCT
[ENA]
¡û
>W1712054922
NFYA01000061
Gammaproteobacteria
Klebsiella pneumoniae [NFYA]
2104
2032
-
Arg
CCT
[ENA]
¡û
>C171065742
CP017671
Gammaproteobacteria
Providencia rettgeri RB151 [CP017671]
2965642
2965716
+
Arg
CCT
-
¡û
>W131243422
CAPA01000008
Gammaproteobacteria
Erwinia amylovora 01SFR-BO [CAPA]
1268325
1268396
+
Arg
CCT
[ENA]
¡û
>WENV180407676
OBUR01000086
[OBUR] human gut metagenome; faeces
50085
50013
-
Arg
CCT
[ENA]
¢þ
>WENV180554190
OCJN01000004
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
435793
435867
+
Arg
CCT
[ENA]
¢þ
>C08003477
CP000822
Gammaproteobacteria
Citrobacter koseri ATCC BAA-895 [CP000822]
427061
426990
-
Arg
CCT
[Ensembl]
¡û
>W141241883
CAHS01000015
Gammaproteobacteria
Erwinia piriflorinigrans CFBP 5888 [CAHS]
856973
857047
+
Arg
CCT
[ENA]
¡û
>W141256296
CBVT010000006
Gammaproteobacteria
Erwinia amylovora LA636 [CBVT]
1596385
1596456
+
Arg
CCT
[ENA]
¡û
>W141485813
JFZU01000013
Gammaproteobacteria
Pantoea ananatis LMG 2665 [JFZU]
168005
168079
+
Arg
CCT
[ENA]
¡û
>C181109702
CP024970
Gammaproteobacteria
Erwinia amylovora E-2 [CP024970]
2559220
2559291
+
Arg
CCT
-
¡û
>C191175808
CP040234
Gammaproteobacteria
Citrobacter sp. TBCP-5362 [CP040234]
1390430
1390356
-
Arg
CCT
-
¡û
>C191199857
LR134204
Gammaproteobacteria
Citrobacter koseri NCTC11075 [LR134204]
1002127
1002201
+
Arg
CCT
-
¡û
>W141700907
JMJJ01000005
Gammaproteobacteria
Pantoea ananatis LMG 2665 [JMJJ]
838315
838389
+
Arg
CCT
[ENA]
¡û
>W141700961
JMJK01000003
Gammaproteobacteria
Pantoea ananatis [JMJK]
1925258
1925332
+
Arg
CCT
[ENA]
¡û
>W1910454522
FWLN01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0292 [FWLN]
580128
580202
+
Arg
CCT
[ENA]
¡û
>W1910457242
FWMW01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0390 [FWMW]
580273
580347
+
Arg
CCT
[ENA]
¡û
>W1910458791
FWNQ01000003
Gammaproteobacteria
Klebsiella pneumoniae VRCO0195 [FWNQ]
238809
238735
-
Arg
CCT
[ENA]
¡û
>W1910803995
MTCI01000008
Gammaproteobacteria
Erwinia sp. OAMSP11 [MTCI]
58181
58107
-
Arg
CCT
[ENA]
¡û
>W1911081912
NMZZ01000005
Gammaproteobacteria
Pantoea ananatis PNA 15-1 [NMZZ]
341975
341901
-
Arg
CCT
[ENA]
¡û
>W1911174418
NQJM01000001
Gammaproteobacteria
Erwinia amylovora RISTBO01-2 [NQJM]
1336482
1336411
-
Arg
CCT
[ENA]
¡û
>W1911174711
NQJQ01000052
Gammaproteobacteria
Erwinia amylovora WSDA87-73 [NQJQ]
64058
63987
-
Arg
CCT
[ENA]
¡û
>W1911175157
NQJX01000019
Gammaproteobacteria
Erwinia amylovora MANB02-1 [NQJX]
280741
280812
+
Arg
CCT
[ENA]
¡û
>W1810597395
QGHF01000006
Gammaproteobacteria
Pantoea allii PNA 200-10 [QGHF]
370307
370233
-
Arg
CCT
[ENA]
¡û
>W1810628848
QICU01000003
Gammaproteobacteria
Pantoea ananatis PNA 07-1 [QICU]
501940
502014
+
Arg
CCT
[ENA]
¡û
>W1810861378
QTTV01000002
Gammaproteobacteria
Pantoea ananatis PANS 200-1 [QTTV]
309874
309800
-
Arg
CCT
[ENA]
¡û
>SRA1014452
SRR023845.146929
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
29
104
+
Arg
CCT
[SRA]
>SRA1014690
SRR023845.264894
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
29
103
+
Arg
CCT
[SRA]
>C10105473
FN434113
Gammaproteobacteria
Erwinia amylovora CFBP1430 CFPB1430 [FN434113]
2522427
2522498
+
Arg
CCT
[Ensembl]
¡û
>C10110077
CP001875
Gammaproteobacteria
Pantoea ananatis LMG 20103 [CP001875]
3039102
3039176
+
Arg
CCT
[Ensembl]
¡û
>C11116615
AP012032
Gammaproteobacteria
Pantoea ananatis AJ13355 [AP012032]
2424766
2424840
+
Arg
CCT
[Ensembl]
¡û
>W1511205275
JMSP01000358
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [JMSP]
495
569
+
Arg
CCT
[ENA]
¡û
>W1511304356
JPKO01000031
Gammaproteobacteria
Pantoea stewartii subsp. indologenes LMG 2632 [JPKO]
370443
370517
+
Arg
CCT
[ENA]
¡û
>W1511448128
JUZK01000015
Gammaproteobacteria
Enterobacter kobei 63_ECLO [JUZK]
50059
49987
-
Arg
CCT
[ENA]
¡û
>W11184509
BABY01000081
Gammaproteobacteria
Plautia stali symbiont [BABY]
7487
7413
-
Arg
CCT
[ENA]
¡û
>C121005487
CP003085
Gammaproteobacteria
Pantoea ananatis PA13 [CP003085]
1417695
1417621
-
Arg
CCT
[Ensembl]
¡û
>C161068328
CP014207
Gammaproteobacteria
Pantoea ananatis R100 [CP014207]
3965901
3965975
+
Arg
CCT
-
¡û
>W1610053018
BBNZ01000001
Gammaproteobacteria
Plautia stali symbiont [BBNZ]
7499
7425
-
Arg
CCT
[ENA]
¡û
>W121084858
AKIU01000035
Gammaproteobacteria
Pantoea sp. GM01 [AKIU]
52169
52095
-
Arg
CCT
[ENA]
¡û
>W1610508592
FLVI01000021
Gammaproteobacteria
Klebsiella pneumoniae PB173 [FLVI]
31069
31141
+
Arg
CCT
[ENA]
¡û
>W1610575709
LAGQ01000029
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
201480
201406
-
Arg
CCT
[ENA]
¡û
>W1610629008
LIHC01000006
Gammaproteobacteria
Pantoea stewartii [LIHC]
244238
244164
-
Arg
CCT
[ENA]
¡û
>W1610990071
LWLR01000001
Gammaproteobacteria
Pantoea sp. OXWO6B1 [LWLR]
3864079
3864153
+
Arg
CCT
[ENA]
¡û
>W1710049396
BBNZ01000001
Gammaproteobacteria
Plautia stali symbiont [BBNZ]
7499
7425
-
Arg
CCT
[ENA]
¡û
>W1710551495
FOGC01000011
Gammaproteobacteria
Rosenbergiella nectarea [FOGC]
98560
98488
-
Arg
CCT
[ENA]
¡û
>W1710570359
FOVC01000002
Gammaproteobacteria
Izhakiella capsodis [FOVC]
579520
579594
+
Arg
CCT
[ENA]
¡û
>W1710580642
FPJM01000001
Gammaproteobacteria
Pantoea ananatis [FPJM]
1323613
1323684
+
Arg
CCT
[ENA]
¡û
>W1710693973
LAGQ01000029
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
201480
201406
-
Arg
CCT
[ENA]
¡û
>W1710710845
LDSF01000024
Gammaproteobacteria
Pantoea dispersa [LDSF]
249708
249782
+
Arg
CCT
[ENA]
¡û
>W1710760141
LIHC01000006
Gammaproteobacteria
Pantoea stewartii [LIHC]
244238
244164
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK