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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366773 (36 seq.)
>W141041979
AMCX01000007
Alphaproteobacteria
Sinorhizobium fredii GR64 [AMCX]
7353
7427
+
Glu
TTC
[ENA]
¡û
>W141041980
AMCX01000007
Alphaproteobacteria
Sinorhizobium fredii GR64 [AMCX]
7658
7732
+
Glu
TTC
[ENA]
¡û
>WENV170883520
MDTC01167364
[MDTC] marine metagenome; seawater
125
199
+
Glu
TTC
[ENA]
¢þ
>C181075854
CP023070
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [CP023070]
1306437
1306363
-
Glu
TTC
-
¡û
>C181075855
CP023070
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [CP023070]
1306132
1306058
-
Glu
TTC
-
¡û
>C181176274
CP029231
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [CP029231]
1354078
1354004
-
Glu
TTC
-
¡û
>C181176275
CP029231
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [CP029231]
1353773
1353699
-
Glu
TTC
-
¡û
>W1910182974
BJNI01000004
Alphaproteobacteria
Sinorhizobium fredii NBRC 14780 [BJNI]
237218
237144
-
Glu
TTC
[ENA]
¡û
>W1910182975
BJNI01000004
Alphaproteobacteria
Sinorhizobium fredii NBRC 14780 [BJNI]
236913
236839
-
Glu
TTC
[ENA]
¡û
>C09108796
CP001389
Alphaproteobacteria
Sinorhizobium fredii NGR234 [CP001389]
1455909
1455835
-
Glu
TTC
[Ensembl]
¡û
>C09108797
CP001389
Alphaproteobacteria
Sinorhizobium fredii NGR234 [CP001389]
1455616
1455542
-
Glu
TTC
[Ensembl]
¡û
>W1911409700
NWTC01000018
Alphaproteobacteria
Sinorhizobium fredii PCH1 [NWTC]
48628
48702
+
Glu
TTC
[ENA]
¡û
>W1911409701
NWTC01000018
Alphaproteobacteria
Sinorhizobium fredii PCH1 [NWTC]
48933
49007
+
Glu
TTC
[ENA]
¡û
>W1911701573
QNUM01000005
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
472094
472168
+
Glu
TTC
[ENA]
¡û
>W1911701579
QNUM01000008
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
135422
135348
-
Glu
TTC
[ENA]
¡û
>W1810725557
QODK01000004
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
133279
133353
+
Glu
TTC
[ENA]
¡û
>W1810725558
QODK01000006
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
133452
133526
+
Glu
TTC
[ENA]
¡û
>C121014613
CP003563
Alphaproteobacteria
Sinorhizobium fredii USDA 257 [CP003563]
3781811
3781737
-
Glu
TTC
[Ensembl]
¡û
>C121018160
HE616890
Alphaproteobacteria
Sinorhizobium fredii HH103 [HE616890]
1406709
1406635
-
Glu
TTC
[Ensembl]
¡û
>C121018161
HE616890
Alphaproteobacteria
Sinorhizobium fredii HH103 [HE616890]
1406404
1406330
-
Glu
TTC
[Ensembl]
¡û
>W1610024829
AUTC01000199
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
237687
237613
-
Glu
TTC
[ENA]
¡û
>W1610024830
AUTC01000199
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
237382
237308
-
Glu
TTC
[ENA]
¡û
>W121066016
AJQM01000185
Alphaproteobacteria
Sinorhizobium fredii CCBAU 05557 [AJQM]
10674
10748
+
Glu
TTC
[ENA]
¡û
>W121066017
AJQM01000185
Alphaproteobacteria
Sinorhizobium fredii CCBAU 05557 [AJQM]
10979
11053
+
Glu
TTC
[ENA]
¡û
>W121066048
AJQN01000086
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [AJQN]
7693
7767
+
Glu
TTC
[ENA]
¡û
>W121066049
AJQN01000086
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [AJQN]
7998
8072
+
Glu
TTC
[ENA]
¡û
>W121066050
AJQN01000086
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [AJQN]
8303
8377
+
Glu
TTC
[ENA]
¡û
>W121066098
AJQO01000072
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [AJQO]
33208
33282
+
Glu
TTC
[ENA]
¡û
>W121066099
AJQO01000072
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [AJQO]
33513
33587
+
Glu
TTC
[ENA]
¡û
>W121066211
AJQQ01000066
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83643 [AJQQ]
2740
2666
-
Glu
TTC
[ENA]
¡û
>W121066212
AJQQ01000066
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83643 [AJQQ]
2435
2361
-
Glu
TTC
[ENA]
¡û
>W1710021270
AUTC01000199
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
237687
237613
-
Glu
TTC
[ENA]
¡û
>W1710021271
AUTC01000199
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
237382
237308
-
Glu
TTC
[ENA]
¡û
>W1710528161
FNMZ01000002
Alphaproteobacteria
Albimonas donghaensis [FNMZ]
589114
589040
-
Glu
TTC
[ENA]
¡û
>W1710571150
FOVR01000007
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
98703
98777
+
Glu
TTC
[ENA]
¡û
>W1710571163
FOVR01000012
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
85771
85845
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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