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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.368002 (20 seq.)
>WENV180100843
OAOT01001778
[OAOT] marine metagenome; Mesotrophic water
148
222
+
Gln
CTG
[ENA]
¢þ
>WENV180359450
OBNR01097604
[OBNR] marine metagenome; Seawater_00002010_00002149
81
8
-
Gln
CTG
[ENA]
¢þ
>WENV182545490
OJBN01004206
[OJBN] seawater metagenome; Sea water
1909
1983
+
Gln
CTG
[ENA]
¢þ
>WENV182558583
OJDM01021376
[OJDM] seawater metagenome; Sea water
385
311
-
Gln
CTG
[ENA]
¢þ
>WENV182561702
OJDX01000682
[OJDX] seawater metagenome; Sea water
775
701
-
Gln
CTG
[ENA]
¢þ
>WENV182561979
OJDY01000567
[OJDY] seawater metagenome; Sea water
1909
1983
+
Gln
CTG
[ENA]
¢þ
>WENV182564170
OJEE01000330
[OJEE] seawater metagenome; Sea water
4433
4359
-
Gln
CTG
[ENA]
¢þ
>WENV182566398
OJEL01000125
[OJEL] seawater metagenome; Sea water
3023
2949
-
Gln
CTG
[ENA]
¢þ
>WENV182569141
OJEY01000949
[OJEY] seawater metagenome; Sea water
2615
2541
-
Gln
CTG
[ENA]
¢þ
>WENV182569833
OJFB01000737
[OJFB] seawater metagenome; Sea water
3342
3268
-
Gln
CTG
[ENA]
¢þ
>WENV182573845
OJFQ01000496
[OJFQ] seawater metagenome; Sea water
1980
2054
+
Gln
CTG
[ENA]
¢þ
>WENV182576633
OJFY01000573
[OJFY] seawater metagenome; Sea water
3063
2989
-
Gln
CTG
[ENA]
¢þ
>WENV182578070
OJGM01001281
[OJGM] seawater metagenome; Sea water
1248
1174
-
Gln
CTG
[ENA]
¢þ
>WENV182590242
OJIH01008417
[OJIH] seawater metagenome; Sea water
495
569
+
Gln
CTG
[ENA]
¢þ
>WENV183053864
OLGR01000618
[OLGR] seawater metagenome; Sea water
486
560
+
Gln
CTG
[ENA]
¢þ
>WENV183054662
OLGU01000912
[OLGU] seawater metagenome; Sea water
1538
1464
-
Gln
CTG
[ENA]
¢þ
>WENV170617665
FUWD012933948
[FUWD] metagenome; unknown
6
80
+
Gln
CTG
[ENA]
¢þ
>WENV170758787
LUMR01029219
[LUMR] marine metagenome; Red Sea water column Station 12 - depth 10m
165
239
+
Gln
CTG
[ENA]
¢þ
>WENV170785576
MDSP01132170
[MDSP] gut metagenome; Stomach gut content
128
54
-
Gln
CTG
[ENA]
¢þ
>WENV170785901
MDSQ01032054
[MDSQ] gut metagenome; Hindgut content
1927
1853
-
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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