This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.368129 (22 seq.)
>W1710987534
LPUR01000022
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
70543
70617
+
Arg
CCT
[ENA]
¡û
>W1711223951
LXTR01000029
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
5021
4947
-
Arg
CCT
[ENA]
¡û
>C171018926
CP012872
Bacteroidota
Salegentibacter sp. T436 [CP012872]
808390
808318
-
Arg
CCT
-
¡û
>WENV180208629
OBAJ01010478
[OBAJ] marine metagenome; Coastal water
83
11
-
Arg
CCT
[ENA]
¢þ
>WENV180787969
ODIS01023363
[ODIS] human metagenome; G_DNA_Supragingival plaque
1778
1706
-
Arg
CCT
[ENA]
¢þ
>WENV180951908
ODUH01072937
[ODUH] human metagenome; G_DNA_Subgingival plaque
83
11
-
Arg
CCT
[ENA]
¢þ
>WENV181080097
OEAS01026579
[OEAS] human metagenome; G_DNA_Supragingival plaque
1583
1511
-
Arg
CCT
[ENA]
¢þ
>WENV183706910
PDWI01005937
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4037
4108
+
Arg
CCT
[ENA]
¢þ
>WENV183738459
PJUE01000002
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
490787
490715
-
Arg
CCT
[ENA]
¢þ
>C181225830
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
343774
343702
-
Arg
CCT
-
¡û
>C191120523
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
1614030
1613958
-
Arg
CCT
-
¡û
>C191120559
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
2087484
2087556
+
Arg
CCT
-
¡û
>C191120896
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1237490
1237562
+
Arg
CCT
-
¡û
>C191144598
CP035544
Bacteroidota
Muriicola soli MMS17-SY002 [CP035544]
65120
65192
+
Arg
CCT
-
¡û
>W1910899202
NGJN01000001
Bacteroidota
Winogradskyella aurantia WNB302 [NGJN]
13118
13046
-
Arg
CCT
[ENA]
¡û
>W1911190703
NQXA01000001
Bacteroidota
Leeuwenhoekiella nanhaiensis G18 [NQXA]
488892
488964
+
Arg
CCT
[ENA]
¡û
>W1610842478
LPUR01000022
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
70543
70617
+
Arg
CCT
[ENA]
¡û
>W1611008322
LXTR01000029
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
5021
4947
-
Arg
CCT
[ENA]
¡û
>W1710514903
FNBH01000003
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
178613
178539
-
Arg
CCT
[ENA]
¡û
>W1710561633
FOOH01000012
Bacteroidota
Salegentibacter agarivorans [FOOH]
76027
75955
-
Arg
CCT
[ENA]
¡û
>W1710600178
FTPU01000005
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
29424
29350
-
Arg
CCT
[ENA]
¡û
>W1710608038
FXAO01000006
Bacteroidota
Arenibacter troitsensis [FXAO]
323340
323266
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK