This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.368481 (90 seq.)
>W1711188807
LWQT01000093
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
2095
2170
+
Ala
TGC
[ENA]
¡û
>C171064780
CP017640
Alphaproteobacteria
Methylobacterium sp. C1 [CP017640]
4979292
4979367
+
Ala
TGC
-
¡û
>C171064795
CP017640
Alphaproteobacteria
Methylobacterium sp. C1 [CP017640]
3996949
3996874
-
Ala
TGC
-
¡û
>C171097446
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
3189182
3189257
+
Ala
TGC
-
¡û
>C171097449
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
3313270
3313345
+
Ala
TGC
-
¡û
>C171097476
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
2469431
2469356
-
Ala
TGC
-
¡û
>C171101483
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
3980697
3980772
+
Ala
TGC
-
¡û
>C171101485
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
3986372
3986447
+
Ala
TGC
-
¡û
>W131163850
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
1064797
1064722
-
Ala
TGC
[ENA]
¡û
>W131163862
ARAB01000011
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
221500
221575
+
Ala
TGC
[ENA]
¡û
>W131171108
ARFZ01000002
Alphaproteobacteria
Amorphus coralli DSM 19760 [ARFZ]
3404
3329
-
Ala
TGC
[ENA]
¡û
>W131186299
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
754075
754150
+
Ala
TGC
[ENA]
¡û
>W131218812
ATYA01000006
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
530711
530786
+
Ala
TGC
[ENA]
¡û
>W131218816
ATYA01000006
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
888231
888306
+
Ala
TGC
[ENA]
¡û
>W131231514
AUIM01000007
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
864546
864471
-
Ala
TGC
[ENA]
¡û
>W131231530
AUIM01000010
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
475803
475728
-
Ala
TGC
[ENA]
¡û
>W131231537
AUIM01000011
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
467031
467106
+
Ala
TGC
[ENA]
¡û
>W131231544
AUIM01000013
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
3563
3488
-
Ala
TGC
[ENA]
¡û
>C013736
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
966613
966688
+
Ala
TGC
[Ensembl]
¡û
>C013739
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
1828839
1828914
+
Ala
TGC
[Ensembl]
¡û
>w015408
AAPC01000005
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
126744
126819
+
Ala
TGC
[ENA]
¡û
>WENV180357726
OBNN01078904
[OBNN] marine metagenome; Coastal water
264
189
-
Ala
TGC
[ENA]
¢þ
>WENV181307946
OFIS01000053
[OFIS] sludge metagenome; sludge
153224
153149
-
Ala
TGC
[ENA]
¢þ
>WENV181375032
OFQY01041229
[OFQY] wastewater metagenome; Exp Tend VB 10WW
657
582
-
Ala
TGC
[ENA]
¢þ
>W141151373
AXBA01000006
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
192816
192891
+
Ala
TGC
[ENA]
¡û
>W141151402
AXBA01000053
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
13443
13518
+
Ala
TGC
[ENA]
¡û
>W141152640
AXBY01000028
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
3948
3873
-
Ala
TGC
[ENA]
¡û
>C08011431
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
1015777
1015852
+
Ala
TGC
[Ensembl]
¡û
>C08011436
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
2152219
2152294
+
Ala
TGC
[Ensembl]
¡û
>WENV183664119
ORJL010345596
[ORJL] groundwater metagenome; groundwater
718
793
+
Ala
TGC
[ENA]
¢þ
>WENV170384273
CETX01267931
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
746
671
-
Ala
TGC
[ENA]
¢þ
>WENV170486486
CEVN01287378
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
210
285
+
Ala
TGC
[ENA]
¢þ
>WENV170552985
CXWK01004875
[CXWK] wastewater metagenome; activated sludge
1507
1432
-
Ala
TGC
[ENA]
¢þ
>WENV170578085
FSSH01013318
[FSSH] freshwater metagenome; drinking water
542
467
-
Ala
TGC
[ENA]
¢þ
>WENV170729274
LULF01020597
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
160
235
+
Ala
TGC
[ENA]
¢þ
>WENV170737283
LULN01010835
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
186
261
+
Ala
TGC
[ENA]
¢þ
>WENV170739529
LULQ01002800
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
210
285
+
Ala
TGC
[ENA]
¢þ
>WENV170759226
LUMS01006714
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
609
684
+
Ala
TGC
[ENA]
¢þ
>WENV170779784
LZQR01000604
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
5047
5122
+
Ala
TGC
[ENA]
¢þ
>C181067707
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
4367637
4367712
+
Ala
TGC
-
¡û
>C181067728
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
3716563
3716488
-
Ala
TGC
-
¡û
>C181067731
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
3640198
3640123
-
Ala
TGC
-
¡û
>C181089644
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
2066747
2066672
-
Ala
TGC
-
¡û
>C181089647
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
2061143
2061068
-
Ala
TGC
-
¡û
>C181089649
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
1968315
1968240
-
Ala
TGC
-
¡û
>C191000395
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
3802142
3802217
+
Ala
TGC
-
¡û
>C191000411
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
2761780
2761705
-
Ala
TGC
-
¡û
>C191000415
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
2187363
2187288
-
Ala
TGC
-
¡û
>C191029942
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
926609
926534
-
Ala
TGC
-
¡û
>C191118910
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
1583850
1583775
-
Ala
TGC
-
¡û
>W141733754
JNLC01000015
Alphaproteobacteria
Bosea sp. 117 [JNLC]
106212
106137
-
Ala
TGC
[ENA]
¡û
>W1910498956
FXXN01000017
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
143346
143421
+
Ala
TGC
[ENA]
¡û
>W1910498967
FXXN01000022
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
74798
74723
-
Ala
TGC
[ENA]
¡û
>W1910501835
FYAU01000042
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
3611
3536
-
Ala
TGC
[ENA]
¡û
>W1910501928
FYAW01000052
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
2065
2140
+
Ala
TGC
[ENA]
¡û
>W1911494873
OBML01000003
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
471623
471698
+
Ala
TGC
[ENA]
¡û
>W1911494883
OBML01000007
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
2241
2316
+
Ala
TGC
[ENA]
¡û
>W1911494893
OBML01000011
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
252095
252020
-
Ala
TGC
[ENA]
¡û
>W1911494908
OBML01000016
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
70219
70294
+
Ala
TGC
[ENA]
¡û
>W1911701587
QNUM01000022
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
2051
2126
+
Ala
TGC
[ENA]
¡û
>W1810079125
PEKQ01002569
Alphaproteobacteria
Methylobacterium radiotolerans KUT39 [PEKQ]
601
676
+
Ala
TGC
[ENA]
¡û
>W1810532682
QCYM01000043
Alphaproteobacteria
Labrenzia sp. 011 [QCYM]
3793
3718
-
Ala
TGC
[ENA]
¡û
>W1810603381
QGLE01000031
Alphaproteobacteria
Zavarzinia aquatilis HR-AS [QGLE]
1139
1064
-
Ala
TGC
[ENA]
¡û
>C151079182
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
3158144
3158069
-
Ala
TGC
[Ensembl]
¡û
>C151079188
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
2694874
2694799
-
Ala
TGC
[Ensembl]
¡û
>C10112207
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
3442466
3442391
-
Ala
TGC
[Ensembl]
¡û
>C11117245
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
493754
493829
+
Ala
TGC
[Ensembl]
¡û
>C11117248
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
633715
633790
+
Ala
TGC
[Ensembl]
¡û
>W121068007
AJTV01000076
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
3833
3758
-
Ala
TGC
[ENA]
¡û
>W121081122
AKFK01000054
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
2165
2240
+
Ala
TGC
[ENA]
¡û
>W1610092172
CXWC01000008
Alphaproteobacteria
Roseibium album alba [CXWC]
4164
4089
-
Ala
TGC
[ENA]
¡û
>W1610540279
JSEP01000005
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
108840
108915
+
Ala
TGC
[ENA]
¡û
>W1610990926
LWQT01000093
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
2095
2170
+
Ala
TGC
[ENA]
¡û
>W1710095529
CXWC01000008
Alphaproteobacteria
Roseibium album alba [CXWC]
4164
4089
-
Ala
TGC
[ENA]
¡û
>W1710505317
FMTP01000006
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
270123
270198
+
Ala
TGC
[ENA]
¡û
>W1710527497
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
145027
145102
+
Ala
TGC
[ENA]
¡û
>W1710527514
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
3305909
3305984
+
Ala
TGC
[ENA]
¡û
>W1710527516
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
3313381
3313456
+
Ala
TGC
[ENA]
¡û
>W1710527518
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
3320854
3320929
+
Ala
TGC
[ENA]
¡û
>W1710527525
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
3722555
3722630
+
Ala
TGC
[ENA]
¡û
>W1710527536
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
4513632
4513707
+
Ala
TGC
[ENA]
¡û
>W1710527548
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
2488580
2488505
-
Ala
TGC
[ENA]
¡û
>W1710527554
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
2234922
2234847
-
Ala
TGC
[ENA]
¡û
>W1710527556
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
2227455
2227380
-
Ala
TGC
[ENA]
¡û
>W1710535114
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
219302
219377
+
Ala
TGC
[ENA]
¡û
>W1710535139
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
5409581
5409656
+
Ala
TGC
[ENA]
¡û
>W1710567173
FOSN01000006
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
180349
180424
+
Ala
TGC
[ENA]
¡û
>W1710643300
JSEP01000005
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
108840
108915
+
Ala
TGC
[ENA]
¡û
>W1710660276
JXMT01000113
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
5
80
+
Ala
TGC
[ENA]
¡û
>W1710693446
LACA01000153
Alphaproteobacteria
Methylobacterium radiotolerans [LACA]
413
488
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK