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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.368693 (130 seq.)
>W1711293986
LZZA01000099
Bacillota
Clostridium saccharobutylicum [LZZA]
151
76
-
Val
TAC
[ENA]
¡û
>W1711293992
LZZA01000118
Bacillota
Clostridium saccharobutylicum [LZZA]
92
167
+
Val
TAC
[ENA]
¡û
>W1711293996
LZZA01000118
Bacillota
Clostridium saccharobutylicum [LZZA]
452
527
+
Val
TAC
[ENA]
¡û
>W1711294206
LZZE01000184
Bacillota
Clostridium beijerinckii [LZZE]
2753
2678
-
Val
TAC
[ENA]
¡û
>W1711294430
LZZK01000031
Bacillota
Clostridium beijerinckii [LZZK]
828
753
-
Val
TAC
[ENA]
¡û
>W1711294433
LZZK01000031
Bacillota
Clostridium beijerinckii [LZZK]
540
465
-
Val
TAC
[ENA]
¡û
>W1711294457
LZZK01000059
Bacillota
Clostridium beijerinckii [LZZK]
22795
22870
+
Val
TAC
[ENA]
¡û
>W1711294461
LZZK01000059
Bacillota
Clostridium beijerinckii [LZZK]
23157
23232
+
Val
TAC
[ENA]
¡û
>W131001737
AGYK01000014
Bacillota
Clostridium butyricum 60E.3 [AGYK]
260044
259969
-
Val
TAC
[ENA]
¡û
>W131001740
AGYK01000014
Bacillota
Clostridium butyricum 60E.3 [AGYK]
259775
259700
-
Val
TAC
[ENA]
¡û
>W131001743
AGYK01000014
Bacillota
Clostridium butyricum 60E.3 [AGYK]
259506
259431
-
Val
TAC
[ENA]
¡û
>W131001776
AGYK01000022
Bacillota
Clostridium butyricum 60E.3 [AGYK]
143
218
+
Val
TAC
[ENA]
¡û
>W1711902854
MZGT01000014
Bacillota
Clostridium chromiireducens [MZGT]
26455
26380
-
Val
TAC
[ENA]
¡û
>W1711902857
MZGT01000014
Bacillota
Clostridium chromiireducens [MZGT]
26173
26098
-
Val
TAC
[ENA]
¡û
>W1711902886
MZGT01000045
Bacillota
Clostridium chromiireducens [MZGT]
2746
2671
-
Val
TAC
[ENA]
¡û
>W1711902890
MZGT01000045
Bacillota
Clostridium chromiireducens [MZGT]
2385
2310
-
Val
TAC
[ENA]
¡û
>C171045599
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
546781
546856
+
Val
TAC
-
¡û
>C171045602
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
547108
547183
+
Val
TAC
-
¡û
>C171045620
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
5079463
5079388
-
Val
TAC
-
¡û
>C171045624
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
5079103
5079028
-
Val
TAC
-
¡û
>C171045628
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
5078743
5078668
-
Val
TAC
-
¡û
>C171045632
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
5078383
5078308
-
Val
TAC
-
¡û
>C171045835
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
476317
476392
+
Val
TAC
-
¡û
>C171045838
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
476601
476676
+
Val
TAC
-
¡û
>C171045852
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
6091292
6091217
-
Val
TAC
-
¡û
>C007052
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
82424
82499
+
Val
TAC
[Ensembl]
¡û
>WENV180233070
OBCP01000107
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
124164
124089
-
Val
TAC
[ENA]
¢þ
>WENV180233625
OBCP01003433
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
160
85
-
Val
TAC
[ENA]
¢þ
>WENV180434135
OBWK01016180
[OBWK] human gut metagenome; faeces
274
199
-
Val
TAC
[ENA]
¢þ
>WENV180504880
OCAO01000127
[OCAO] human gut metagenome; faeces
50783
50858
+
Val
TAC
[ENA]
¢þ
>WENV180505026
OCAO01000713
[OCAO] human gut metagenome; faeces
7957
8032
+
Val
TAC
[ENA]
¢þ
>WENV180506745
OCAS01005166
[OCAS] human gut metagenome; faeces
230
155
-
Val
TAC
[ENA]
¢þ
>WENV180569456
OCLR01000084
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
124137
124062
-
Val
TAC
[ENA]
¢þ
>WENV180569670
OCLR01000298
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
35050
34975
-
Val
TAC
[ENA]
¢þ
>WENV180569674
OCLR01000298
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
34686
34611
-
Val
TAC
[ENA]
¢þ
>WENV180640013
OCRL01000335
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
41706
41781
+
Val
TAC
[ENA]
¢þ
>WENV180640262
OCRL01001054
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
245
170
-
Val
TAC
[ENA]
¢þ
>WENV180641250
OCRM01001337
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
245
170
-
Val
TAC
[ENA]
¢þ
>W141083105
AUPH01000075
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
697
772
+
Val
TAC
[ENA]
¡û
>WENV181798866
OGRX01000767
[OGRX] human gut metagenome; fecal sample 2 from infant 8
230
155
-
Val
TAC
[ENA]
¢þ
>WENV181801995
OGSC01001002
[OGSC] human gut metagenome; fecal sample 8 from infant 5
230
155
-
Val
TAC
[ENA]
¢þ
>WENV181805383
OGSI01000274
[OGSI] human gut metagenome; fecal sample 4 from infant 8
230
155
-
Val
TAC
[ENA]
¢þ
>WENV181807894
OGSQ01000770
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
231
156
-
Val
TAC
[ENA]
¢þ
>WENV181807905
OGSQ01000861
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
6758
6683
-
Val
TAC
[ENA]
¢þ
>WENV181810575
OGSV01000253
[OGSV] human gut metagenome; fecal sample 4 from infant 3
230
155
-
Val
TAC
[ENA]
¢þ
>WENV181814018
OGTE01000573
[OGTE] human gut metagenome; fecal sample 2 from infant 3
230
155
-
Val
TAC
[ENA]
¢þ
>WENV181822966
OGUH01000796
[OGUH] human gut metagenome; fecal sample 3 from infant 3
5804
5729
-
Val
TAC
[ENA]
¢þ
>W08001302
ABDT01000025
Bacillota
Clostridium butyricum 5521 [ABDT]
34075
34003
-
Val
TAC
[ENA]
¡û
>W08001306
ABDT01000025
Bacillota
Clostridium butyricum 5521 [ABDT]
33681
33609
-
Val
TAC
[ENA]
¡û
>W08001310
ABDT01000025
Bacillota
Clostridium butyricum 5521 [ABDT]
33286
33214
-
Val
TAC
[ENA]
¡û
>W08001370
ABDT01000114
Bacillota
Clostridium butyricum 5521 [ABDT]
67420
67495
+
Val
TAC
[ENA]
¡û
>W08001373
ABDT01000114
Bacillota
Clostridium butyricum 5521 [ABDT]
67689
67764
+
Val
TAC
[ENA]
¡û
>W141200264
AYXR01000016
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
64751
64826
+
Val
TAC
[ENA]
¡û
>W141200301
AYXR01000047
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
35325
35250
-
Val
TAC
[ENA]
¡û
>W141200305
AYXR01000047
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
34962
34887
-
Val
TAC
[ENA]
¡û
>W141258994
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
490805
490730
-
Val
TAC
[ENA]
¡û
>W141258997
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
490535
490460
-
Val
TAC
[ENA]
¡û
>W141259014
CBYK010000019
Bacillota
Clostridium butyricum [CBYK]
41106
41031
-
Val
TAC
[ENA]
¡û
>W141259018
CBYK010000019
Bacillota
Clostridium butyricum [CBYK]
40711
40636
-
Val
TAC
[ENA]
¡û
>WENV182618656
OJKF01005741
[OJKF] metagenome; faeces
412
337
-
Val
TAC
[ENA]
¢þ
>WENV182944712
OKVJ01001156
[OKVJ] human gut metagenome; human gut
4862
4937
+
Val
TAC
[ENA]
¢þ
>WENV182944716
OKVJ01001156
[OKVJ] human gut metagenome; human gut
5255
5330
+
Val
TAC
[ENA]
¢þ
>WENV182944720
OKVJ01001156
[OKVJ] human gut metagenome; human gut
5650
5725
+
Val
TAC
[ENA]
¢þ
>WENV182944789
OKVJ01001599
[OKVJ] human gut metagenome; human gut
3042
2967
-
Val
TAC
[ENA]
¢þ
>WENV182944792
OKVJ01001599
[OKVJ] human gut metagenome; human gut
2773
2698
-
Val
TAC
[ENA]
¢þ
>WENV182949936
OKVQ01002191
[OKVQ] human gut metagenome; human gut
385
310
-
Val
TAC
[ENA]
¢þ
>WENV182950612
OKVS01002592
[OKVS] human gut metagenome; human gut
783
858
+
Val
TAC
[ENA]
¢þ
>WENV170657703
JTFP01011344
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
3315
3390
+
Val
TAC
[ENA]
¢þ
>WENV170657733
JTFP01013169
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
509
434
-
Val
TAC
[ENA]
¢þ
>C181159883
CP027782
Bacillota
Clostridium tetani Mfbjulcb2 [CP027782]
2347101
2347026
-
Val
TAC
-
¡û
>C181159886
CP027782
Bacillota
Clostridium tetani Mfbjulcb2 [CP027782]
2346823
2346748
-
Val
TAC
-
¡û
>C181176746
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1478382
1478457
+
Val
TAC
-
¡û
>C181176749
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1478714
1478789
+
Val
TAC
-
¡û
>C181176762
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
954085
954010
-
Val
TAC
-
¡û
>C181176766
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
953719
953644
-
Val
TAC
-
¡û
>C181176770
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
953352
953277
-
Val
TAC
-
¡û
>C181203645
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
579899
579974
+
Val
TAC
-
¡û
>C181203648
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
580187
580262
+
Val
TAC
-
¡û
>C181203662
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
6347257
6347182
-
Val
TAC
-
¡û
>C181203666
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
6346893
6346818
-
Val
TAC
-
¡û
>C181203670
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
6346531
6346456
-
Val
TAC
-
¡û
>C191171186
CP039702
Bacillota
Clostridium butyricum [CP039702]
564067
564142
+
Val
TAC
-
¡û
>C191171189
CP039702
Bacillota
Clostridium butyricum [CP039702]
564336
564411
+
Val
TAC
-
¡û
>C191171217
CP039702
Bacillota
Clostridium butyricum [CP039702]
23354
23279
-
Val
TAC
-
¡û
>C191171312
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2309752
2309827
+
Val
TAC
-
¡û
>C191171315
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2310019
2310094
+
Val
TAC
-
¡û
>C191171323
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1778428
1778353
-
Val
TAC
-
¡û
>C191171327
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1778034
1777959
-
Val
TAC
-
¡û
>C191171331
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1777639
1777564
-
Val
TAC
-
¡û
>W141560225
JHXK01000012
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
234329
234254
-
Val
TAC
[ENA]
¡û
>W143004096
AZLX01000217
Bacillota
Clostridium butyricum DORA_1 [AZLX]
620
692
+
Val
TAC
[ENA]
¡û
>W1910637965
LRDH01000055
Bacillota
Clostridium butyricum 300064 [LRDH]
77
2
-
Val
TAC
[ENA]
¡û
>W1910637977
LRDH01000094
Bacillota
Clostridium butyricum 300064 [LRDH]
130
205
+
Val
TAC
[ENA]
¡û
>W1911694180
QMAP01000010
Bacillota
Clostridium tetani 2017.061 [QMAP]
91167
91092
-
Val
TAC
[ENA]
¡û
>W1911694717
QMAY01000010
Bacillota
Clostridium tetani 641.84 [QMAY]
39076
39151
+
Val
TAC
[ENA]
¡û
>W1911694720
QMAY01000010
Bacillota
Clostridium tetani 641.84 [QMAY]
39353
39428
+
Val
TAC
[ENA]
¡û
>W1911694839
QMBA01000012
Bacillota
Clostridium tetani 3582 [QMBA]
39089
39164
+
Val
TAC
[ENA]
¡û
>W1911694842
QMBA01000012
Bacillota
Clostridium tetani 3582 [QMBA]
39366
39441
+
Val
TAC
[ENA]
¡û
>W1911694888
QMBB01000008
Bacillota
Clostridium tetani TMB2 [QMBB]
91487
91412
-
Val
TAC
[ENA]
¡û
>W1911694891
QMBB01000008
Bacillota
Clostridium tetani TMB2 [QMBB]
91210
91135
-
Val
TAC
[ENA]
¡û
>W1911694957
QMBC01000011
Bacillota
Clostridium tetani COR1 [QMBC]
91155
91080
-
Val
TAC
[ENA]
¡û
>W1911695024
QMBD01000015
Bacillota
Clostridium tetani B4 [QMBD]
39078
39153
+
Val
TAC
[ENA]
¡û
>W1911695027
QMBD01000015
Bacillota
Clostridium tetani B4 [QMBD]
39355
39430
+
Val
TAC
[ENA]
¡û
>W1911695260
QMBH01000012
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
13248
13173
-
Val
TAC
[ENA]
¡û
>W1911696401
QMDR01000025
Bacillota
Clostridium tetani 3483 [QMDR]
92690
92615
-
Val
TAC
[ENA]
¡û
>W1911696404
QMDR01000025
Bacillota
Clostridium tetani 3483 [QMDR]
92413
92338
-
Val
TAC
[ENA]
¡û
>W1810052551
PDCJ01000004
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
246633
246558
-
Val
TAC
[ENA]
¡û
>W1810052559
PDCJ01000005
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
40194
40269
+
Val
TAC
[ENA]
¡û
>W1810052563
PDCJ01000005
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
40548
40623
+
Val
TAC
[ENA]
¡û
>W1810250522
PQCS01000033
Bacillota
Clostridium sp. 3-3 [PQCS]
14855
14930
+
Val
TAC
[ENA]
¡û
>W1810250525
PQCS01000033
Bacillota
Clostridium sp. 3-3 [PQCS]
15124
15199
+
Val
TAC
[ENA]
¡û
>W1810250528
PQCS01000033
Bacillota
Clostridium sp. 3-3 [PQCS]
15393
15468
+
Val
TAC
[ENA]
¡û
>W1810805970
QRUG01000039
Bacillota
Clostridium butyricum AF25-25 [QRUG]
23804
23729
-
Val
TAC
[ENA]
¡û
>W1810805974
QRUG01000039
Bacillota
Clostridium butyricum AF25-25 [QRUG]
23409
23334
-
Val
TAC
[ENA]
¡û
>C151100860
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
83315
83390
+
Val
TAC
[Ensembl]
¡û
>W1511345171
JRGG01000002
Bacillota
Clostridium tetani C2 [JRGG]
13191
13116
-
Val
TAC
[ENA]
¡û
>W1511480257
JWIX01000059
Bacillota
Clostridium tetani A [JWIX]
164
89
-
Val
TAC
[ENA]
¡û
>W1511554833
JZWF01000044
Bacillota
Clostridium sp. IBUN125C [JZWF]
383
458
+
Val
TAC
[ENA]
¡û
>W1511554839
JZWF01000053
Bacillota
Clostridium sp. IBUN125C [JZWF]
63763
63838
+
Val
TAC
[ENA]
¡û
>W1511554930
JZWH01000026
Bacillota
Clostridium sp. IBUN62F [JZWH]
2130
2055
-
Val
TAC
[ENA]
¡û
>W1511554939
JZWH01000035
Bacillota
Clostridium sp. IBUN62F [JZWH]
103
178
+
Val
TAC
[ENA]
¡û
>W11176301
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
868504
868579
+
Val
TAC
[ENA]
¡û
>W11176312
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
223195
223120
-
Val
TAC
[ENA]
¡û
>C161076423
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
488371
488446
+
Val
TAC
-
¡û
>C161076434
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
3744832
3744757
-
Val
TAC
-
¡û
>C161076438
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
3744437
3744362
-
Val
TAC
-
¡û
>W1610104391
CZBQ01000120
Bacillota
Clostridium paraputrificum [CZBQ]
129
204
+
Val
TAC
[ENA]
¡û
>WENV082825
BAAW01002289
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
1425
1348
-
Val
TAC
[ENA]
>W1710107095
CZBQ01000120
Bacillota
Clostridium paraputrificum [CZBQ]
129
204
+
Val
TAC
[ENA]
¡û
>W1710521503
FNGL01000005
Bacillota
Clostridium cochlearium [FNGL]
84509
84434
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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