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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.369245 (23 seq.)
>W1710926319
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58927
58853
-
Asn
GTT
[ENA]
¡û
>W1710926335
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
50073
49999
-
Asn
GTT
[ENA]
¡û
>W1710926351
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
132
206
+
Asn
GTT
[ENA]
¡û
>W1710926371
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
1438
1364
-
Asn
GTT
[ENA]
¡û
>C171059802
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3525171
3525245
+
Asn
GTT
-
¡û
>C171059813
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3955364
3955438
+
Asn
GTT
-
¡û
>C171059827
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3961948
3962022
+
Asn
GTT
-
¡û
>C171059843
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2744036
2743962
-
Asn
GTT
-
¡û
>C171059874
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
762384
762310
-
Asn
GTT
-
¡û
>C171059890
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
620504
620430
-
Asn
GTT
-
¡û
>WENV183746080
POVV01007349
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
805
879
+
Asn
GTT
[ENA]
¢þ
>WENV170020551
BBPE01011519
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1494
1568
+
Asn
GTT
[ENA]
¢þ
>W1910665322
MCHZ01000002
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
1498
1424
-
Asn
GTT
[ENA]
¡û
>W1910665344
MCHZ01000009
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
390
464
+
Asn
GTT
[ENA]
¡û
>W1910665362
MCHZ01000011
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
1560
1486
-
Asn
GTT
[ENA]
¡û
>W1910665374
MCHZ01000013
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
17183
17257
+
Asn
GTT
[ENA]
¡û
>W1610783812
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58927
58853
-
Asn
GTT
[ENA]
¡û
>W1610783828
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
50073
49999
-
Asn
GTT
[ENA]
¡û
>W1610783844
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
132
206
+
Asn
GTT
[ENA]
¡û
>W1610783864
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
1438
1364
-
Asn
GTT
[ENA]
¡û
>W1710589076
FQZV01000058
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
22672
22598
-
Asn
GTT
[ENA]
¡û
>W1710589709
FRAJ01000025
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
24499
24573
+
Asn
GTT
[ENA]
¡û
>W1710589713
FRAJ01000026
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
17306
17380
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK