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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370076 (30 seq.)
>W131058610
ANFQ01000149
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
644
573
-
Gly
GCC
[ENA]
¡û
>W1712002228
NEED01000023
Cyanobacteriota
unicellular cyanobacterium SU2 [NEED]
167629
167558
-
Gly
GCC
[ENA]
¡û
>C171127253
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
1809651
1809722
+
Gly
GCC
-
¡û
>C171127264
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
4536203
4536274
+
Gly
GCC
-
¡û
>WENV180595800
OCPF01042589
[OCPF] marine metagenome; ENVO.00002150
111
184
+
Gly
GCC
[ENA]
¢þ
>W141234754
BAWS01000007
Cyanobacteriota
Picosynechococcus sp. NKBG042902 NKBG 042902 [BAWS]
30776
30703
-
Gly
GCC
[ENA]
¡û
>C08010841
CP000951
Cyanobacteriota
Picosynechococcus sp. PCC 7002 PCC 7002; ATCC 27264 [CP000951]
135781
135854
+
Gly
GCC
[Ensembl]
¡û
>WENV170682740
LFIK01000990
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
11144
11215
+
Gly
GCC
[ENA]
¢þ
>WENV170702314
LKMJ01001260
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11144
11215
+
Gly
GCC
[ENA]
¢þ
>WENV171002962
NJIW01004802
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
209
280
+
Gly
GCC
[ENA]
¢þ
>CHL1810012788
KJ746599
Viridiplantae
Picocystis salinarum (KJ746599)
65203
65274
+
Gly
GCC
[ENA]
¡û
>CHL1810038729
KY018922
Rhodophyta
Gracilaria changii (KY018922)
102064
102137
+
Gly
GCC
[ENA]
¡û
>CHL1810038800
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
86933
86862
-
Gly
GCC
[ENA]
¡û
>CHL1810049760
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
118330
118403
+
Gly
GCC
[ENA]
¡û
>CHL1810049936
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
119111
119184
+
Gly
GCC
[ENA]
¡û
>CHL1810050034
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
116115
116188
+
Gly
GCC
[ENA]
¡û
>CHL1810050636
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
117679
117752
+
Gly
GCC
[ENA]
¡û
>CHL1810050662
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
124454
124527
+
Gly
GCC
[ENA]
¡û
>CHL1810050712
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
113068
113141
+
Gly
GCC
[ENA]
¡û
>CHL1810050814
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
115422
115493
+
Gly
GCC
[ENA]
¡û
>CHL1810058649
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
125654
125581
-
Gly
GCC
[ENA]
¡û
>W1911204846
NRIU01000444
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
477
548
+
Gly
GCC
[ENA]
¡û
>CHL090100358
AF166114
Viridiplantae
Mesostigma viride
65475
65403
-
Gly
GCC
[ENA]
¡û
>W1810047904
PCGE01000059
Cyanobacteriota
Synechococcus sp. BDU 130192 [PCGE]
27585
27512
-
Gly
GCC
[ENA]
¡û
>C161063973
CP013998
Cyanobacteriota
Picosynechococcus sp. PCC 73109 [CP013998]
154940
155013
+
Gly
GCC
-
¡û
>C161097379
CP016483
Cyanobacteriota
Picosynechococcus sp. PCC 8807 [CP016483]
145410
145483
+
Gly
GCC
-
¡û
>W1710608975
FXBO01000001
Cyanobacteriota
Picosynechococcus sp. OG1 OG1 [FXBO]
1428205
1428278
+
Gly
GCC
[ENA]
¡û
>W1710698086
LAZT01000007
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
14578
14649
+
Gly
GCC
[ENA]
¡û
>W1710698117
LAZT01000047
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
44872
44801
-
Gly
GCC
[ENA]
¡û
>W1710698132
LAZT01000105
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
550
621
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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