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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37095 (42 seq.)
>W1711377916
MDZH01000375
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
100807
100722
-
Leu
TAA
[ENA]
¡û
>W131063367
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
697658
697573
-
Leu
TAA
[ENA]
¡û
>W131087174
AOCI01000118
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
37411
37326
-
Leu
TAA
[ENA]
¡û
>W131203781
ASZQ01000259
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
23970
23885
-
Leu
TAA
[ENA]
¡û
>W1711603024
MOLN01000032
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
6396
6481
+
Leu
TAA
[ENA]
¡û
>W1711772016
MVGR01000003
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
216358
216273
-
Leu
TAA
[ENA]
¡û
>C171016634
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2431919
2432004
+
Leu
TAA
-
¡û
>C171112056
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
1070426
1070511
+
Leu
TAA
-
¡û
>W141065560
AQPY01000256
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
5468
5383
-
Leu
TAA
[ENA]
¡û
>W141242393
CAIH01000437
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
9380
9465
+
Leu
TAA
[ENA]
¡û
>W141242426
CAII01000659
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
6930
7015
+
Leu
TAA
[ENA]
¡û
>W141242458
CAIJ01000414
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
7030
6945
-
Leu
TAA
[ENA]
¡û
>W141242501
CAIK01000385
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
1149
1234
+
Leu
TAA
[ENA]
¡û
>W141242523
CAIL01000102
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
13157
13242
+
Leu
TAA
[ENA]
¡û
>W141242585
CAIM01000680
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
1205
1290
+
Leu
TAA
[ENA]
¡û
>W141242625
CAIN01000465
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
6285
6370
+
Leu
TAA
[ENA]
¡û
>W141242630
CAIO01000070
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
23421
23336
-
Leu
TAA
[ENA]
¡û
>W141242699
CAIP01000424
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
10130
10215
+
Leu
TAA
[ENA]
¡û
>W141242728
CAIQ01000277
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
6261
6349
+
Leu
TAA
[ENA]
¡û
>C08006366
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
4628718
4628633
-
Leu
TAA
[Ensembl]
¡û
>WENV182866000
OKRQ01010572
[OKRQ] freshwater metagenome; freshwater
679
594
-
Leu
TAA
[ENA]
¢þ
>WENV170680816
LFEF01024121
[LFEF] freshwater metagenome; waterbloom
34968
34883
-
Leu
TAA
[ENA]
¢þ
>C181046165
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2198660
2198745
+
Leu
TAA
-
¡û
>C191007278
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2519603
2519518
-
Leu
TAA
-
¡û
>W1910020354
BDSG01000052
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
2839
2754
-
Leu
TAA
[ENA]
¡û
>W1910020388
BDSM01000013
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
150760
150675
-
Leu
TAA
[ENA]
¡û
>W1910038671
BEIU01000017
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
107947
108032
+
Leu
TAA
[ENA]
¡û
>W1910038716
BEIV01000123
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
7654
7569
-
Leu
TAA
[ENA]
¡û
>W1910067366
BEYQ01000008
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
97976
97891
-
Leu
TAA
[ENA]
¡û
>W1910067416
BFAC01000020
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
45599
45514
-
Leu
TAA
[ENA]
¡û
>W1910142339
BIFY01000071
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
18419
18504
+
Leu
TAA
[ENA]
¡û
>W1910665574
MCIH01000113
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
29028
28943
-
Leu
TAA
[ENA]
¡û
>W1910768672
MOLZ01000072
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
6734
6819
+
Leu
TAA
[ENA]
¡û
>C151079365
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2435146
2435231
+
Leu
TAA
[Ensembl]
¡û
>C151080708
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
5127579
5127494
-
Leu
TAA
-
¡û
>W1510013630
BBPA01000051
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
115658
115573
-
Leu
TAA
[ENA]
¡û
>W1610550827
JXYX01000007
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
122007
122092
+
Leu
TAA
[ENA]
¡û
>W1710004746
AJHB01001519
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
2842
2757
-
Leu
TAA
[ENA]
¡û
>W1710005096
AJUS01001601
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
2885
2800
-
Leu
TAA
[ENA]
¡û
>W1710005133
AJUT01001497
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
2867
2782
-
Leu
TAA
[ENA]
¡û
>W1710005169
AJUU01001486
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
2935
2850
-
Leu
TAA
[ENA]
¡û
>W1710660704
JXYX01000007
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
122007
122092
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK