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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371093 (42 seq.)
>W1710873909
LMNE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
276616
276541
-
Lys
TTT
[ENA]
¡û
>W1710874182
LMNJ01000053
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
145893
145818
-
Lys
TTT
[ENA]
¡û
>W1710874249
LMNL01000012
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
122048
122123
+
Lys
TTT
[ENA]
¡û
>W1710874359
LMNN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
189397
189472
+
Lys
TTT
[ENA]
¡û
>W1710874423
LMNP01000006
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
189156
189231
+
Lys
TTT
[ENA]
¡û
>W1710874557
LMNS01000004
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
192167
192242
+
Lys
TTT
[ENA]
¡û
>W1710878208
LMQT01000019
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
137630
137705
+
Lys
TTT
[ENA]
¡û
>W1711179449
LWHQ01000059
Alphaproteobacteria
Methylobacterium platani [LWHQ]
59532
59607
+
Lys
TTT
[ENA]
¡û
>W131051740
AMXU01000070
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
10396
10471
+
Lys
TTT
[ENA]
¡û
>C171092160
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
3852421
3852346
-
Lys
TTT
-
¡û
>C171115198
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
4959804
4959879
+
Lys
TTT
-
¡û
>C08006491
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
3419746
3419821
+
Lys
TTT
[Ensembl]
¡û
>W141278843
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
498423
498348
-
Lys
TTT
[ENA]
¡û
>C181180096
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2209238
2209313
+
Lys
TTT
-
¡û
>W1910006626
BAUX01000008
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
56561
56636
+
Lys
TTT
[ENA]
¡û
>C09107422
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
3478474
3478549
+
Lys
TTT
[Ensembl]
¡û
>C09107507
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
3784013
3784088
+
Lys
TTT
[Ensembl]
¡û
>C09107609
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
3420732
3420807
+
Lys
TTT
[Ensembl]
¡û
>W1911708559
QOWC01000042
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
22506
22431
-
Lys
TTT
[ENA]
¡û
>W1911798335
QYRN01000004
Alphaproteobacteria
Aureimonas flava M2BS4Y-1 [QYRN]
403533
403458
-
Lys
TTT
[ENA]
¡û
>W1810192895
PKMZ01000001
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
1046006
1045931
-
Lys
TTT
[ENA]
¡û
>W1810487194
QAYK01000001
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
178790
178865
+
Lys
TTT
[ENA]
¡û
>SRA1015747
SRR023846.180121
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
21
-
Lys
TTT
[SRA]
>W1511507893
JXOD01000153
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
27140
27215
+
Lys
TTT
[ENA]
¡û
>W1511563232
LABX01000047
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
32607
32682
+
Lys
TTT
[ENA]
¡û
>W1511563300
LABY01000069
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
21140
21065
-
Lys
TTT
[ENA]
¡û
>W1511563400
LABZ01000327
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
742
667
-
Lys
TTT
[ENA]
¡û
>C161004968
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
3218516
3218591
+
Lys
TTT
[Ensembl]
¡û
>W1610056582
BBWJ01000045
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
87791
87866
+
Lys
TTT
[ENA]
¡û
>W1610590603
LDRN01000347
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
413
338
-
Lys
TTT
[ENA]
¡û
>W1610736255
LMNE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
276616
276541
-
Lys
TTT
[ENA]
¡û
>W1610736528
LMNJ01000053
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
145893
145818
-
Lys
TTT
[ENA]
¡û
>W1610736595
LMNL01000012
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
122048
122123
+
Lys
TTT
[ENA]
¡û
>W1610736705
LMNN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
189397
189472
+
Lys
TTT
[ENA]
¡û
>W1610736769
LMNP01000006
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
189156
189231
+
Lys
TTT
[ENA]
¡û
>W1610736903
LMNS01000004
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
192167
192242
+
Lys
TTT
[ENA]
¡û
>W1610740554
LMQT01000019
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
137630
137705
+
Lys
TTT
[ENA]
¡û
>W1610987350
LWHQ01000059
Alphaproteobacteria
Methylobacterium platani [LWHQ]
59532
59607
+
Lys
TTT
[ENA]
¡û
>W1710053281
BBWJ01000045
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
87791
87866
+
Lys
TTT
[ENA]
¡û
>W1710561280
FOOA01000013
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
94243
94168
-
Lys
TTT
[ENA]
¡û
>W1710567540
FOSV01000005
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
109326
109251
-
Lys
TTT
[ENA]
¡û
>W1710709883
LDRN01000347
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
413
338
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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