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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371167 (36 seq.)
>W1710854766
LLXU01000111
Gammaproteobacteria
Stenotrophomonas panacihumi [LLXU]
2961
2886
-
Ala
CGC
[ENA]
¡û
>W1711386248
MEFB01000063
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
4633
4558
-
Ala
CGC
[ENA]
¡û
>W1711386252
MEFB01000099
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
4621
4546
-
Ala
CGC
[ENA]
¡û
>W1711386557
MEFO01000009
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
117341
117416
+
Ala
CGC
[ENA]
¡û
>W131231923
AUIV01000014
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
40948
40873
-
Ala
CGC
[ENA]
¡û
>W141149605
AWZR01000003
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
112103
112178
+
Ala
CGC
[ENA]
¡û
>W141207698
AZNZ01000003
Gammaproteobacteria
Pseudoxanthomonas sp. J31 [AZNZ]
83215
83140
-
Ala
CGC
[ENA]
¡û
>W141216670
AZVB01000007
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
56195
56120
-
Ala
CGC
[ENA]
¡û
>WENV182941541
OKVG01002815
[OKVG] human gut metagenome; human gut
2197
2272
+
Ala
CGC
[ENA]
¢þ
>WENV182947603
OKVM01004790
[OKVM] human gut metagenome; human gut
661
586
-
Ala
CGC
[ENA]
¢þ
>WENV183734080
PJTZ01000041
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
55734
55659
-
Ala
CGC
[ENA]
¢þ
>WENV183736084
PJUC01000021
[PJUC] soil metagenome; Soil enriched on filter paper
122914
122989
+
Ala
CGC
[ENA]
¢þ
>WENV183740487
PJUF01002637
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4629
4704
+
Ala
CGC
[ENA]
¢þ
>WENV183742006
PJUH01000039
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
55933
55858
-
Ala
CGC
[ENA]
¢þ
>WENV183742816
PJUI01000350
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
5171
5246
+
Ala
CGC
[ENA]
¢þ
>WENV170574249
FLYM01017697
[FLYM] hot springs metagenome; Sediment
1581
1506
-
Ala
CGC
[ENA]
¢þ
>WENV170654660
JRYL01003616
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
4385
4310
-
Ala
CGC
[ENA]
¢þ
>C181039149
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
1540339
1540264
-
Ala
CGC
-
¡û
>C191183318
CP040871
Gammaproteobacteria
Thermomonas aquatica SY21 [CP040871]
606818
606743
-
Ala
CGC
-
¡û
>W1911199802
NRDP01000012
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
40907
40832
-
Ala
CGC
[ENA]
¡û
>W1810195893
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
770525
770450
-
Ala
CGC
[ENA]
¡û
>W1810485583
QAVX01000011
Gammaproteobacteria
Dyella sp. C11 [QAVX]
113158
113233
+
Ala
CGC
[ENA]
¡û
>W1810628318
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
166691
166766
+
Ala
CGC
[ENA]
¡û
>C151077898
CP011144
Gammaproteobacteria
Pseudoxanthomonas suwonensis J1 [CP011144]
124974
125049
+
Ala
CGC
[Ensembl]
¡û
>C11118173
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
1488800
1488725
-
Ala
CGC
[Ensembl]
¡û
>W1511547588
JZRB01000026
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
24008
24083
+
Ala
CGC
[ENA]
¡û
>C121005599
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
1889079
1889004
-
Ala
CGC
[Ensembl]
¡û
>C161031675
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
2042876
2042801
-
Ala
CGC
[Ensembl]
¡û
>C161047169
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
1738533
1738458
-
Ala
CGC
[Ensembl]
¡û
>W1610027347
AVPU01000009
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
77121
77196
+
Ala
CGC
[ENA]
¡û
>W121113888
ALOY01000159
Gammaproteobacteria
Dyella japonica A8 [ALOY]
36405
36330
-
Ala
CGC
[ENA]
¡û
>W1610717107
LLXU01000111
Gammaproteobacteria
Stenotrophomonas panacihumi [LLXU]
2961
2886
-
Ala
CGC
[ENA]
¡û
>W1710023581
AVPU01000009
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
77121
77196
+
Ala
CGC
[ENA]
¡û
>W1710519813
FNFA01000004
Gammaproteobacteria
Dyella jiangningensis [FNFA]
246584
246509
-
Ala
CGC
[ENA]
¡û
>W1710527397
FNKZ01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
1791575
1791500
-
Ala
CGC
[ENA]
¡û
>W1710579385
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
700207
700282
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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