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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371215 (43 seq.)
>W1711460397
MJEF01000004
Bacillota
Enterococcus casseliflavus [MJEF]
173561
173489
-
Val
TAC
[ENA]
¡û
>W1711460416
MJEF01000019
Bacillota
Enterococcus casseliflavus [MJEF]
73525
73451
-
Val
TAC
[ENA]
¡û
>W1712067606
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
2586
2660
+
Val
TAC
[ENA]
¡û
>W1712067627
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
778730
778802
+
Val
TAC
[ENA]
¡û
>W1712067642
NGLC01000002
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
261261
261187
-
Val
TAC
[ENA]
¡û
>W1712067886
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
3474873
3474799
-
Val
TAC
[ENA]
¡û
>W1712067894
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
3228440
3228366
-
Val
TAC
[ENA]
¡û
>W1712067916
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
2446604
2446532
-
Val
TAC
[ENA]
¡û
>W1712068058
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
2949212
2949284
+
Val
TAC
[ENA]
¡û
>W1712068071
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
1854146
1854072
-
Val
TAC
[ENA]
¡û
>W1712068079
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
1582019
1581945
-
Val
TAC
[ENA]
¡û
>W1712097016
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
3613776
3613702
-
Val
TAC
[ENA]
¡û
>W1712097062
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
2799206
2799134
-
Val
TAC
[ENA]
¡û
>W1712097075
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
140631
140557
-
Val
TAC
[ENA]
¡û
>W131208740
ATID01000051
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
276
348
+
Val
TAC
[ENA]
¡û
>W131209136
ATIM01000157
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
272
344
+
Val
TAC
[ENA]
¡û
>WENV182982164
OKZA01000254
[OKZA] human gut metagenome; human gut
174
100
-
Val
TAC
[ENA]
¢þ
>W09115332
ACAH01000048
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
242
314
+
Val
TAC
[ENA]
¡û
>W09115344
ACAH01000074
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
16
90
+
Val
TAC
[ENA]
¡û
>W09115520
ACAL01000035
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
242
314
+
Val
TAC
[ENA]
¡û
>W09115532
ACAL01000051
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
597
523
-
Val
TAC
[ENA]
¡û
>C191094121
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
822249
822323
+
Val
TAC
-
¡û
>C191094130
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
1076595
1076669
+
Val
TAC
-
¡û
>C191094163
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
1839621
1839693
+
Val
TAC
-
¡û
>W1910181715
BJMG01000029
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
14096
14024
-
Val
TAC
[ENA]
¡û
>W1910181725
BJMG01000049
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
16
90
+
Val
TAC
[ENA]
¡û
>W1810793562
QRJU01000012
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
111368
111296
-
Val
TAC
[ENA]
¡û
>W1810798140
QRMZ01000011
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
126
198
+
Val
TAC
[ENA]
¡û
>W1510079454
CDRD01001772
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
169
243
+
Val
TAC
[ENA]
¡û
>W1510079482
CDRD01002236
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
125
51
-
Val
TAC
[ENA]
¡û
>W1510079498
CDRD01002654
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
348
276
-
Val
TAC
[ENA]
¡û
>W1510079508
CDRE01000263
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
1886
1814
-
Val
TAC
[ENA]
¡û
>W1510079546
CDRE01001595
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
5421
5495
+
Val
TAC
[ENA]
¡û
>W1510079555
CDRE01001902
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
959
885
-
Val
TAC
[ENA]
¡û
>C161066322
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
2147663
2147735
+
Val
TAC
[Ensembl]
¡û
>C161066337
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
1029312
1029238
-
Val
TAC
[Ensembl]
¡û
>C161066346
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
723010
722936
-
Val
TAC
[Ensembl]
¡û
>W1610066459
BCPT01000009
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
145134
145062
-
Val
TAC
[ENA]
¡û
>W1610066496
BCPT01000052
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
515
441
-
Val
TAC
[ENA]
¡û
>WENV085316
BABC01000359
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
5061
5138
+
Val
TAC
[ENA]
>WENV085413
BABC01005691
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
493
418
-
Val
TAC
[ENA]
>W1710063797
BCPT01000009
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
145134
145062
-
Val
TAC
[ENA]
¡û
>W1710063834
BCPT01000052
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
515
441
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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