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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371413 (94 seq.)
>W1710804755
LJZK01000094
Gammaproteobacteria
Pseudomonas aeruginosa [LJZK]
153392
153317
-
Thr
TGT
[ENA]
¡û
>W1710847747
LLSN01000135
Gammaproteobacteria
Pseudomonas aeruginosa [LLSN]
370467
370542
+
Thr
TGT
[ENA]
¡û
>W1711089345
LSZO01000017
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
3082
3007
-
Thr
TGT
[ENA]
¡û
>W1711184969
LWMZ01000025
Gammaproteobacteria
Pseudomonas sp. HMSC08G10 [LWMZ]
47727
47802
+
Thr
TGT
[ENA]
¡û
>W1711256239
LYSP01000006
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
93408
93483
+
Thr
TGT
[ENA]
¡û
>W1711295522
MACM02000186
Gammaproteobacteria
Pseudomonas sp. AU12215 [MACM]
68140
68215
+
Thr
TGT
[ENA]
¡û
>W1711945811
NBMS01000018
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
301089
301014
-
Thr
TGT
[ENA]
¡û
>W1711958613
NBWC01000014
Gammaproteobacteria
Pseudomonas putida [NBWC]
183745
183820
+
Thr
TGT
[ENA]
¡û
>W1711978375
NDFR01000073
Gammaproteobacteria
Pseudomonas aeruginosa [NDFR]
99541
99616
+
Thr
TGT
[ENA]
¡û
>W1711978484
NDFT01000082
Gammaproteobacteria
Pseudomonas aeruginosa [NDFT]
152276
152351
+
Thr
TGT
[ENA]
¡û
>W1711978591
NDFV01000089
Gammaproteobacteria
Pseudomonas aeruginosa [NDFV]
137181
137256
+
Thr
TGT
[ENA]
¡û
>W1712102449
NINR01000002
Gammaproteobacteria
Pseudomonas aeruginosa [NINR]
191558
191483
-
Thr
TGT
[ENA]
¡û
>C171111325
CP020703
Gammaproteobacteria
Pseudomonas aeruginosa PASGNDM345 [CP020703]
6399225
6399300
+
Thr
TGT
-
¡û
>C171122996
CP021774
Gammaproteobacteria
Pseudomonas aeruginosa Pa124 [CP021774]
6420105
6420180
+
Thr
TGT
-
¡û
>W131058998
ANGB01000003
Gammaproteobacteria
Pseudomonas chengduensis 34 [ANGB]
381583
381658
+
Thr
TGT
[ENA]
¡û
>W131225953
AUEA01000001
Gammaproteobacteria
Pseudomonas cremoricolorata DSM 17059 [AUEA]
373978
373903
-
Thr
TGT
[ENA]
¡û
>W131231104
AUIE01000028
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
100847
100922
+
Thr
TGT
[ENA]
¡û
>WENV180310893
OBJT01046934
[OBJT] soil metagenome; soil
424
349
-
Thr
TGT
[ENA]
¢þ
>w002053
AAAU03000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
1579821
1579896
+
Thr
TGT
[ENA]
¡û
>W141160233
AXPG01000014
Gammaproteobacteria
Pseudomonas aeruginosa BL20 [AXPG]
358047
358122
+
Thr
TGT
[ENA]
¡û
>W141161457
AXQA01000014
Gammaproteobacteria
Pseudomonas aeruginosa BWHPSA028 [AXQA]
619824
619899
+
Thr
TGT
[ENA]
¡û
>WENV181837459
OGVK01051030
[OGVK] freshwater metagenome; freshwater
303
228
-
Thr
TGT
[ENA]
¢þ
>W141185412
AYJQ01000059
Gammaproteobacteria
Pseudomonas putida S610 [AYJQ]
9668
9743
+
Thr
TGT
[ENA]
¡û
>W141216332
AZUT01000025
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
63824
63899
+
Thr
TGT
[ENA]
¡û
>W141217372
AZVN01000007
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I11 [AZVN]
249412
249487
+
Thr
TGT
[ENA]
¡û
>W141221554
AZZC01000011
Gammaproteobacteria
Pseudomonas aeruginosa PS50 [AZZC]
543123
543198
+
Thr
TGT
[ENA]
¡û
>W141222405
AZZQ01000013
Gammaproteobacteria
Pseudomonas aeruginosa BWHPSA037 [AZZQ]
548169
548244
+
Thr
TGT
[ENA]
¡û
>W141236689
BBIP01000002
Gammaproteobacteria
Pseudomonas cremoricolorata NBRC 16634 [BBIP]
114013
113938
-
Thr
TGT
[ENA]
¡û
>WENV170015343
AZIG01003421
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
216
291
+
Thr
TGT
[ENA]
¢þ
>WENV170016173
AZIJ01013913
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
621
546
-
Thr
TGT
[ENA]
¢þ
>WENV170537142
CEWQ01011072
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
116
191
+
Thr
TGT
[ENA]
¢þ
>WENV170966711
MTEY01005493
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
30280
30355
+
Thr
TGT
[ENA]
¢þ
>C181000755
AP014862
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AP014862]
5852360
5852435
+
Thr
TGT
-
¡û
>C181014484
CP014025
Gammaproteobacteria
Pseudomonas fulva FDAARGOS_167 [CP014025]
223403
223328
-
Thr
TGT
-
¡û
>C181020443
CP016634
Gammaproteobacteria
Pseudomonas putida IEC33019 [CP016634]
5415359
5415434
+
Thr
TGT
-
¡û
>C181075374
CP023048
Gammaproteobacteria
Pseudomonas fulva SB1 [CP023048]
4595552
4595627
+
Thr
TGT
-
¡û
>W09102091
AAHH01000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
1579821
1579896
+
Thr
TGT
[ENA]
¡û
>C191064680
CP029605
Gammaproteobacteria
Pseudomonas aeruginosa 24Pae112 [CP029605]
6593820
6593895
+
Thr
TGT
-
¡û
>C191146177
CP035739
Gammaproteobacteria
Pseudomonas aeruginosa 1334/14 [CP035739]
4594575
4594500
-
Thr
TGT
-
¡û
>W1910288907
FRHP01000114
Gammaproteobacteria
Pseudomonas aeruginosa [FRHP]
133649
133574
-
Thr
TGT
[ENA]
¡û
>W1910294030
FRLE01000032
Gammaproteobacteria
Pseudomonas aeruginosa [FRLE]
17641
17716
+
Thr
TGT
[ENA]
¡û
>W1910302758
FRRE01000016
Gammaproteobacteria
Pseudomonas aeruginosa [FRRE]
2138
2063
-
Thr
TGT
[ENA]
¡û
>W1910303986
FRSA01000074
Gammaproteobacteria
Pseudomonas aeruginosa [FRSA]
4853
4778
-
Thr
TGT
[ENA]
¡û
>W1910610664
LFDG01000018
Gammaproteobacteria
Pseudomonas aeruginosa BK5 [LFDG]
6790
6715
-
Thr
TGT
[ENA]
¡û
>W1910671932
MCMR01000009
Gammaproteobacteria
Pseudomonas aeruginosa [MCMR]
153541
153466
-
Thr
TGT
[ENA]
¡û
>W1910743735
MHZK01000279
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPHIGHO2_02_FULL_60_43 [MHZK]
41665
41740
+
Thr
TGT
[ENA]
¡û
>W1910830132
MWXP01000009
Gammaproteobacteria
Pseudomonas aeruginosa 146 Assistante [MWXP]
153794
153719
-
Thr
TGT
[ENA]
¡û
>W1910830304
MWXS01000010
Gammaproteobacteria
Pseudomonas aeruginosa PPF-21 [MWXS]
153818
153743
-
Thr
TGT
[ENA]
¡û
>C09100927
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
404752
404677
-
Thr
TGT
[Ensembl]
¡û
>W1910994366
NKXW01000030
Gammaproteobacteria
Pseudomonas aeruginosa Pae160 [NKXW]
83959
84034
+
Thr
TGT
[ENA]
¡û
>W1911195295
NRAE01000002
Gammaproteobacteria
Pseudomonas aeruginosa env179 [NRAE]
405755
405830
+
Thr
TGT
[ENA]
¡û
>W1911202040
NRFU01000051
Gammaproteobacteria
Pseudomonas aeruginosa env241b [NRFU]
2232
2157
-
Thr
TGT
[ENA]
¡û
>W1911246957
NSLB01000003
Gammaproteobacteria
Pseudomonas sp. HAR-UPW-AIA-41 [NSLB]
292876
292801
-
Thr
TGT
[ENA]
¡û
>W1911250547
NSNR01000003
Gammaproteobacteria
Pseudomonas aeruginosa PA-W4 [NSNR]
278777
278852
+
Thr
TGT
[ENA]
¡û
>W1911263854
NSWU01000005
Gammaproteobacteria
Pseudomonas aeruginosa AUS507 [NSWU]
2380
2305
-
Thr
TGT
[ENA]
¡û
>W1911267916
NSZP01000003
Gammaproteobacteria
Pseudomonas aeruginosa AUS183 [NSZP]
145548
145473
-
Thr
TGT
[ENA]
¡û
>W1911269255
NTAN01000001
Gammaproteobacteria
Pseudomonas aeruginosa PA-W27 [NTAN]
540997
541072
+
Thr
TGT
[ENA]
¡û
>W1911269503
NTAR01000004
Gammaproteobacteria
Pseudomonas aeruginosa PA-W20 [NTAR]
542176
542251
+
Thr
TGT
[ENA]
¡û
>W1911825387
QZXL01000342
Gammaproteobacteria
Pseudomonas aeruginosa VET-69 [QZXL]
363
288
-
Thr
TGT
[ENA]
¡û
>W1911825440
QZXM01000231
Gammaproteobacteria
Pseudomonas aeruginosa VET-68 [QZXM]
4122
4197
+
Thr
TGT
[ENA]
¡û
>W1810017280
BGPP01000011
Gammaproteobacteria
Pseudomonas citronellolis LA18T [BGPP]
45659
45734
+
Thr
TGT
[ENA]
¡û
>W1810158428
PJCP01000001
Gammaproteobacteria
Pseudomonas guariconensis MR119 [PJCP]
190991
191066
+
Thr
TGT
[ENA]
¡û
>W1810158535
PJCR01000001
Gammaproteobacteria
Pseudomonas guariconensis MR149 [PJCR]
190991
191066
+
Thr
TGT
[ENA]
¡û
>W1810239721
PPSO01000006
Gammaproteobacteria
Pseudomonas aeruginosa DLL7525 [PPSO]
161314
161239
-
Thr
TGT
[ENA]
¡û
>W1810332092
PUQE01000022
Gammaproteobacteria
Pseudomonas aeruginosa GER_MD14_1510_Pae_083 [PUQE]
2286
2211
-
Thr
TGT
[ENA]
¡û
>W1810378812
PXJI01000082
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
7787
7862
+
Thr
TGT
[ENA]
¡û
>W1810474407
QAIG01000013
Gammaproteobacteria
Pseudomonas sp. HMWF032 [QAIG]
183889
183964
+
Thr
TGT
[ENA]
¡û
>W1810476901
QAOJ01000005
Gammaproteobacteria
Pseudomonas sp. GV071 [QAOJ]
278411
278486
+
Thr
TGT
[ENA]
¡û
>W1810670675
QJRX01000006
Gammaproteobacteria
Pseudomonas alcaligenes MB-090714 [QJRX]
251421
251346
-
Thr
TGT
[ENA]
¡û
>W1810671136
QJSO01000004
Gammaproteobacteria
Pseudomonas sp. GV034 [QJSO]
278411
278486
+
Thr
TGT
[ENA]
¡û
>W1810676401
QKLY01000013
Gammaproteobacteria
Pseudomonas sp. OV467 [QKLY]
109635
109560
-
Thr
TGT
[ENA]
¡û
>W1810899164
QVAP01000006
Gammaproteobacteria
Pseudomonas aeruginosa PABL108 [QVAP]
17863
17938
+
Thr
TGT
[ENA]
¡û
>C151051613
CP009455
Gammaproteobacteria
Pseudomonas cremoricolorata ND07 [CP009455]
1009792
1009867
+
Thr
TGT
[Ensembl]
¡û
>C151100225
HG322950
Gammaproteobacteria
Pseudomonas knackmussii B13 [HG322950]
5750995
5751070
+
Thr
TGT
[Ensembl]
¡û
>ENV09000403
ABSN01064873
Freshwater sediment metagenome lwFormaldehyde_C1
658
733
+
Thr
TGT
[ENA]
¡û
>W1511307120
JPMY01000006
Gammaproteobacteria
Pseudomonas sp. ML96 [JPMY]
171387
171312
-
Thr
TGT
[ENA]
¡û
>W1511406006
JTNH01000002
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE15039 [JTNH]
226775
226850
+
Thr
TGT
[ENA]
¡û
>W1511407122
JTOB01000018
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE15019 [JTOB]
15256
15331
+
Thr
TGT
[ENA]
¡û
>W1511407396
JTOG01000009
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE15014 [JTOG]
159967
159892
-
Thr
TGT
[ENA]
¡û
>W1511419001
JTWL01000012
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE14721 [JTWL]
5523
5448
-
Thr
TGT
[ENA]
¡û
>W1511420107
JTXF01000037
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE14700 [JTXF]
32740
32665
-
Thr
TGT
[ENA]
¡û
>W1511584931
LAWW01000014
Gammaproteobacteria
Pseudomonas fulva YAB-1 [LAWW]
540078
540153
+
Thr
TGT
[ENA]
¡û
>W1610592074
LDSN01000034
Gammaproteobacteria
Pseudomonas parafulva [LDSN]
276
351
+
Thr
TGT
[ENA]
¡û
>W1610668612
LJZK01000094
Gammaproteobacteria
Pseudomonas aeruginosa [LJZK]
153392
153317
-
Thr
TGT
[ENA]
¡û
>W1610710886
LLSN01000135
Gammaproteobacteria
Pseudomonas aeruginosa [LLSN]
370467
370542
+
Thr
TGT
[ENA]
¡û
>W1610923723
LSZO01000017
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
3082
3007
-
Thr
TGT
[ENA]
¡û
>W1611050909
MACM02000186
Gammaproteobacteria
Pseudomonas sp. AU12215 [MACM]
68140
68215
+
Thr
TGT
[ENA]
¡û
>W1710518010
FNDS01000008
Gammaproteobacteria
Pseudomonas panipatensis [FNDS]
225645
225570
-
Thr
TGT
[ENA]
¡û
>W1710541746
FNYO01000022
Gammaproteobacteria
Azotobacter beijerinckii [FNYO]
46503
46428
-
Thr
TGT
[ENA]
¡û
>W1710541852
FNYQ01000051
Gammaproteobacteria
Azotobacter beijerinckii [FNYQ]
27359
27434
+
Thr
TGT
[ENA]
¡û
>W1710550560
FOFJ01000046
Gammaproteobacteria
Azotobacter beijerinckii [FOFJ]
1032
957
-
Thr
TGT
[ENA]
¡û
>W1710556660
FOKJ01000033
Gammaproteobacteria
Azotobacter beijerinckii [FOKJ]
28296
28371
+
Thr
TGT
[ENA]
¡û
>W1710573431
FOXM01000004
Gammaproteobacteria
Pseudomonas sagittaria [FOXM]
182051
181976
-
Thr
TGT
[ENA]
¡û
>W1710711354
LDSN01000034
Gammaproteobacteria
Pseudomonas parafulva [LDSN]
276
351
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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