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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37212 (129 seq.)
>W1711066509
LSCX01000011
Actinomycetota
Coriobacteriales bacterium DNF00809 [LSCX]
20963
20875
-
Leu
GAG
[ENA]
¡û
>W1712039245
NFJN01000033
Actinomycetota
Gordonibacter urolithinfaciens [NFJN]
7885
7973
+
Leu
GAG
[ENA]
¡û
>C171131359
LT827128
Actinomycetota
Gordonibacter massiliensis [LT827128]
942202
942290
+
Leu
GAG
-
¡û
>W131195913
ASSY01000005
Actinomycetota
Adlercreutzia caecimuris B7 [ASSY]
288535
288623
+
Leu
GAG
[ENA]
¡û
>WENV180138224
OATP01020884
[OATP] human gut metagenome; faeces
412
324
-
Leu
GAG
[ENA]
¢þ
>WENV180141554
OATU01024027
[OATU] human gut metagenome; faeces
296
208
-
Leu
GAG
[ENA]
¢þ
>WENV180181326
OAWM01002976
[OAWM] human gut metagenome; faeces
1140
1052
-
Leu
GAG
[ENA]
¢þ
>WENV180187079
OAWV01009706
[OAWV] human gut metagenome; faeces
548
636
+
Leu
GAG
[ENA]
¢þ
>WENV180290435
OBIU01021737
[OBIU] human gut metagenome; human gut
141
229
+
Leu
GAG
[ENA]
¢þ
>WENV180320374
OBKN01187929
[OBKN] human gut metagenome; human gut
12
100
+
Leu
GAG
[ENA]
¢þ
>WENV180529046
OCHJ01075149
[OCHJ] human gut metagenome; human gut
279
191
-
Leu
GAG
[ENA]
¢þ
>WENV180622741
OCQC01138734
[OCQC] human gut metagenome; human gut
224
136
-
Leu
GAG
[ENA]
¢þ
>WENV180629305
OCQP01072140
[OCQP] human gut metagenome; human gut
150
62
-
Leu
GAG
[ENA]
¢þ
>WENV180712218
ODFT01000052
[ODFT] human metagenome; G_DNA_Posterior fornix
19902
19990
+
Leu
GAG
[ENA]
¢þ
>WENV180747661
ODHN01012979
[ODHN] human metagenome; G_DNA_Stool
2163
2251
+
Leu
GAG
[ENA]
¢þ
>WENV180829650
ODKA01287370
[ODKA] human metagenome; G_DNA_Stool
89
1
-
Leu
GAG
[ENA]
¢þ
>WENV180943012
ODUA01002522
[ODUA] human metagenome; G_DNA_Posterior fornix
102
14
-
Leu
GAG
[ENA]
¢þ
>WENV181149094
OEHT01023832
[OEHT] human metagenome; G_DNA_Stool
347
435
+
Leu
GAG
[ENA]
¢þ
>WENV181247574
OFFK01059605
[OFFK] mouse gut metagenome; faeces
283
195
-
Leu
GAG
[ENA]
¢þ
>WENV181271573
OFGF01066988
[OFGF] mouse gut metagenome; faeces
383
471
+
Leu
GAG
[ENA]
¢þ
>WENV181272423
OFGG01011782
[OFGG] mouse gut metagenome; faeces
2832
2920
+
Leu
GAG
[ENA]
¢þ
>WENV181303591
OFHP01036536
[OFHP] mouse gut metagenome; faeces
524
436
-
Leu
GAG
[ENA]
¢þ
>WENV181350481
OFMO01020165
[OFMO] human gut metagenome; human gut
216
304
+
Leu
GAG
[ENA]
¢þ
>WENV181419252
OGCN01000025
[OGCN] human gut metagenome; human gut
224052
224140
+
Leu
GAG
[ENA]
¢þ
>WENV181427335
OGCQ01065292
[OGCQ] human gut metagenome; human gut
547
635
+
Leu
GAG
[ENA]
¢þ
>WENV181437568
OGDF01155013
[OGDF] human gut metagenome; human gut
359
447
+
Leu
GAG
[ENA]
¢þ
>WENV181440699
OGDN01001839
[OGDN] human gut metagenome; human gut
14535
14447
-
Leu
GAG
[ENA]
¢þ
>WENV181679144
OGOR01051155
[OGOR] human gut metagenome; faeces
458
546
+
Leu
GAG
[ENA]
¢þ
>WENV181709161
OGPM01053953
[OGPM] human gut metagenome; faeces
406
494
+
Leu
GAG
[ENA]
¢þ
>WENV181747060
OGQN01010558
[OGQN] human gut metagenome; faeces
2079
1991
-
Leu
GAG
[ENA]
¢þ
>WENV181754439
OGQR01016673
[OGQR] human gut metagenome; faeces
2079
1991
-
Leu
GAG
[ENA]
¢þ
>WENV181765404
OGQY01012960
[OGQY] human gut metagenome; faeces
2942
3030
+
Leu
GAG
[ENA]
¢þ
>WENV181788950
OGRO01005572
[OGRO] human gut metagenome; faeces
5620
5532
-
Leu
GAG
[ENA]
¢þ
>WENV181795255
OGRS01051912
[OGRS] human gut metagenome; faeces
206
118
-
Leu
GAG
[ENA]
¢þ
>WENV181817073
OGTL01059825
[OGTL] human gut metagenome; faeces
127
39
-
Leu
GAG
[ENA]
¢þ
>WENV181883798
OGXI01013683
[OGXI] human gut metagenome; faeces
2253
2165
-
Leu
GAG
[ENA]
¢þ
>WENV181897163
OGXS01041905
[OGXS] human gut metagenome; faeces
507
595
+
Leu
GAG
[ENA]
¢þ
>WENV181904926
OGXX01050339
[OGXX] human gut metagenome; faeces
795
707
-
Leu
GAG
[ENA]
¢þ
>WENV181920154
OGYI01026887
[OGYI] human gut metagenome; faeces
970
882
-
Leu
GAG
[ENA]
¢þ
>WENV182065569
OHFA01011464
[OHFA] human gut metagenome; feces
832
744
-
Leu
GAG
[ENA]
¢þ
>WENV182251328
OHST01026872
[OHST] human gut metagenome; feces
436
348
-
Leu
GAG
[ENA]
¢þ
>WENV182287694
OHVS01024630
[OHVS] human gut metagenome; feces
463
551
+
Leu
GAG
[ENA]
¢þ
>WENV182325577
OHYS01037789
[OHYS] human gut metagenome; feces
260
172
-
Leu
GAG
[ENA]
¢þ
>WENV182354502
OIBN01011733
[OIBN] human gut metagenome; feces
907
995
+
Leu
GAG
[ENA]
¢þ
>WENV182355629
OIBP01010386
[OIBP] human gut metagenome; feces
1095
1183
+
Leu
GAG
[ENA]
¢þ
>WENV182515780
OIWN01003376
[OIWN] human gut metagenome; faeces
1952
1864
-
Leu
GAG
[ENA]
¢þ
>WENV182519140
OIWP01004872
[OIWP] human gut metagenome; faeces
7969
8057
+
Leu
GAG
[ENA]
¢þ
>WENV182533116
OIXA01009786
[OIXA] human gut metagenome; faeces
2298
2210
-
Leu
GAG
[ENA]
¢þ
>WENV182684205
OJNX01053974
[OJNX] human gut metagenome; human gut
292
204
-
Leu
GAG
[ENA]
¢þ
>WENV182802804
OJUG01057079
[OJUG] human gut metagenome; human gut
498
410
-
Leu
GAG
[ENA]
¢þ
>WENV182873810
OKRW01001539
[OKRW] human gut metagenome; faeces
392
304
-
Leu
GAG
[ENA]
¢þ
>WENV183087118
OLJF01141827
[OLJF] metagenome; faeces
346
434
+
Leu
GAG
[ENA]
¢þ
>WENV183096030
OLND01012199
[OLND] human gut metagenome; faeces
1585
1673
+
Leu
GAG
[ENA]
¢þ
>WENV183099597
OLNF01011044
[OLNF] human gut metagenome; faeces
858
770
-
Leu
GAG
[ENA]
¢þ
>WENV183101023
OLNG01001826
[OLNG] human gut metagenome; faeces
8031
8119
+
Leu
GAG
[ENA]
¢þ
>WENV183101024
OLNG01001826
[OLNG] human gut metagenome; faeces
8463
8551
+
Leu
GAG
[ENA]
¢þ
>WENV183103127
OLNJ01000004
[OLNJ] human gut metagenome; faeces
218068
218156
+
Leu
GAG
[ENA]
¢þ
>WENV183106474
OLNL01008302
[OLNL] human gut metagenome; faeces
261
349
+
Leu
GAG
[ENA]
¢þ
>WENV183110070
OLNN01067018
[OLNN] human gut metagenome; faeces
123
35
-
Leu
GAG
[ENA]
¢þ
>WENV183117276
OLNR01010323
[OLNR] human gut metagenome; faeces
952
1040
+
Leu
GAG
[ENA]
¢þ
>WENV183129184
OLNZ01061181
[OLNZ] human gut metagenome; faeces
433
521
+
Leu
GAG
[ENA]
¢þ
>WENV183140353
OLOI01022630
[OLOI] human gut metagenome; faeces
461
549
+
Leu
GAG
[ENA]
¢þ
>WENV183141345
OLOJ01002411
[OLOJ] human gut metagenome; faeces
872
784
-
Leu
GAG
[ENA]
¢þ
>WENV183146115
OLOM01003388
[OLOM] human gut metagenome; faeces
8047
8135
+
Leu
GAG
[ENA]
¢þ
>WENV183148244
OLON01022511
[OLON] human gut metagenome; faeces
776
688
-
Leu
GAG
[ENA]
¢þ
>WENV183161825
OLOV01020375
[OLOV] human gut metagenome; faeces
1474
1562
+
Leu
GAG
[ENA]
¢þ
>WENV183165179
OLOX01002923
[OLOX] human gut metagenome; faeces
475
387
-
Leu
GAG
[ENA]
¢þ
>WENV183166819
OLOY01001397
[OLOY] human gut metagenome; faeces
8056
8144
+
Leu
GAG
[ENA]
¢þ
>WENV183169895
OLPA01015887
[OLPA] human gut metagenome; faeces
1687
1775
+
Leu
GAG
[ENA]
¢þ
>WENV183170769
OLPB01000960
[OLPB] human gut metagenome; faeces
12072
12160
+
Leu
GAG
[ENA]
¢þ
>WENV183174914
OLPE01032004
[OLPE] human gut metagenome; faeces
536
448
-
Leu
GAG
[ENA]
¢þ
>WENV183177381
OLPG01001085
[OLPG] human gut metagenome; faeces
23287
23375
+
Leu
GAG
[ENA]
¢þ
>WENV183180725
OLPI01000950
[OLPI] human gut metagenome; faeces
3847
3935
+
Leu
GAG
[ENA]
¢þ
>WENV183185125
OLPN01003298
[OLPN] human gut metagenome; faeces
10748
10836
+
Leu
GAG
[ENA]
¢þ
>WENV183195430
OLPT01007103
[OLPT] human gut metagenome; faeces
1281
1193
-
Leu
GAG
[ENA]
¢þ
>WENV183195431
OLPT01007103
[OLPT] human gut metagenome; faeces
849
761
-
Leu
GAG
[ENA]
¢þ
>WENV183197506
OLPU01058697
[OLPU] human gut metagenome; faeces
172
84
-
Leu
GAG
[ENA]
¢þ
>WENV183198707
OLPV01003790
[OLPV] human gut metagenome; faeces
7921
8009
+
Leu
GAG
[ENA]
¢þ
>WENV183202735
OLPX01029763
[OLPX] human gut metagenome; faeces
777
689
-
Leu
GAG
[ENA]
¢þ
>WENV183207684
OLQA01033436
[OLQA] human gut metagenome; faeces
1134
1222
+
Leu
GAG
[ENA]
¢þ
>WENV183213600
OLQD01109113
[OLQD] human gut metagenome; faeces
122
210
+
Leu
GAG
[ENA]
¢þ
>WENV183214333
OLQE01006599
[OLQE] human gut metagenome; faeces
1605
1517
-
Leu
GAG
[ENA]
¢þ
>WENV183216931
OLQH01029252
[OLQH] human gut metagenome; faeces
317
229
-
Leu
GAG
[ENA]
¢þ
>WENV183219207
OLQK01000108
[OLQK] human gut metagenome; faeces
475
387
-
Leu
GAG
[ENA]
¢þ
>WENV183220290
OLQL01000005
[OLQL] human gut metagenome; faeces
213017
213105
+
Leu
GAG
[ENA]
¢þ
>WENV183220826
OLQL01000632
[OLQL] human gut metagenome; faeces
8106
8018
-
Leu
GAG
[ENA]
¢þ
>WENV183232564
OLQU01025174
[OLQU] human gut metagenome; faeces
39
127
+
Leu
GAG
[ENA]
¢þ
>WENV183236716
OLQX01013748
[OLQX] human gut metagenome; faeces
1606
1694
+
Leu
GAG
[ENA]
¢þ
>WENV183241415
OLRB01000016
[OLRB] human gut metagenome; faeces
112256
112344
+
Leu
GAG
[ENA]
¢þ
>WENV183241416
OLRB01000016
[OLRB] human gut metagenome; faeces
112695
112783
+
Leu
GAG
[ENA]
¢þ
>WENV183255092
OLRJ01055431
[OLRJ] human gut metagenome; faeces
632
544
-
Leu
GAG
[ENA]
¢þ
>WENV183263028
OLRQ01035820
[OLRQ] human gut metagenome; faeces
298
210
-
Leu
GAG
[ENA]
¢þ
>WENV183273592
OLRX01015828
[OLRX] human gut metagenome; faeces
478
566
+
Leu
GAG
[ENA]
¢þ
>WENV183286308
OLSE01006957
[OLSE] human gut metagenome; faeces
200
288
+
Leu
GAG
[ENA]
¢þ
>WENV183288900
OLSG01000621
[OLSG] human gut metagenome; faeces
43377
43465
+
Leu
GAG
[ENA]
¢þ
>WENV183291620
OLSI01004368
[OLSI] human gut metagenome; faeces
4881
4969
+
Leu
GAG
[ENA]
¢þ
>WENV183292839
OLSJ01010293
[OLSJ] human gut metagenome; faeces
510
598
+
Leu
GAG
[ENA]
¢þ
>WENV183294560
OLSK01033455
[OLSK] human gut metagenome; faeces
370
458
+
Leu
GAG
[ENA]
¢þ
>WENV183295972
OLSL01007110
[OLSL] human gut metagenome; faeces
612
524
-
Leu
GAG
[ENA]
¢þ
>WENV183298072
OLSM01035819
[OLSM] human gut metagenome; faeces
432
344
-
Leu
GAG
[ENA]
¢þ
>WENV183299338
OLSN01005316
[OLSN] human gut metagenome; faeces
6022
6110
+
Leu
GAG
[ENA]
¢þ
>WENV183322892
OLVX01007901
[OLVX] human gut metagenome; faeces
416
328
-
Leu
GAG
[ENA]
¢þ
>WENV183345765
OLWR01018955
[OLWR] human gut metagenome; feces
1026
938
-
Leu
GAG
[ENA]
¢þ
>WENV183365855
OLXN01062798
[OLXN] human gut metagenome; feces
373
461
+
Leu
GAG
[ENA]
¢þ
>WENV183401545
OLZT01042083
[OLZT] human gut metagenome; feces
289
377
+
Leu
GAG
[ENA]
¢þ
>WENV183497588
OMGN01008301
[OMGN] human gut metagenome; feces
218
130
-
Leu
GAG
[ENA]
¢þ
>WENV183520252
OMNT01008346
[OMNT] human gut metagenome; faeces
5135
5223
+
Leu
GAG
[ENA]
¢þ
>WENV183520351
OMNT01011357
[OMNT] human gut metagenome; faeces
2118
2030
-
Leu
GAG
[ENA]
¢þ
>WENV183569322
OOCB01028401
[OOCB] human gut metagenome; human gut
1288
1376
+
Leu
GAG
[ENA]
¢þ
>WENV183659378
OQWM01021816
[OQWM] human gut metagenome; human gut
856
768
-
Leu
GAG
[ENA]
¢þ
>WENV183773265
PPYF01026604
[PPYF] human gut metagenome; stool from patient with Crohn's disease
20533
20621
+
Leu
GAG
[ENA]
¢þ
>C181221156
LT900217
Actinomycetota
Gordonibacter urolithinfaciens DSM 27213T [LT900217]
3202396
3202484
+
Leu
GAG
-
¡û
>C191209625
LR134379
Actinomycetota
Slackia heliotrinireducens NCTC11029 [LR134379]
1049134
1049222
+
Leu
GAG
-
¡û
>W09109851
ABUP01000012
Actinomycetota
Slackia heliotrinireducens DSM 20476 [ABUP]
21992
22080
+
Leu
GAG
[ENA]
¡û
>W1910439693
FWDJ01000001
Actinomycetota
Arabiibacter massiliensis Marseille-P3078 [FWDJ]
333808
333896
+
Leu
GAG
[ENA]
¡û
>W1911679862
QIBV01000029
Actinomycetota
Gordonibacter urolithinfaciens JCM 16058 [QIBV]
19738
19650
-
Leu
GAG
[ENA]
¡û
>W1911679903
QIBW01000014
Actinomycetota
Gordonibacter urolithinfaciens DSM 27213 [QIBW]
59183
59271
+
Leu
GAG
[ENA]
¡û
>W1911679928
QIBX01000005
Actinomycetota
Slackia equolifaciens DSM 24851 [QIBX]
103229
103317
+
Leu
GAG
[ENA]
¡û
>W1911680036
QIBZ01000004
Actinomycetota
Slackia isoflavoniconvertens DSM 22006 [QIBZ]
22316
22404
+
Leu
GAG
[ENA]
¡û
>W1911680037
QIBZ01000004
Actinomycetota
Slackia isoflavoniconvertens DSM 22006 [QIBZ]
22748
22836
+
Leu
GAG
[ENA]
¡û
>W1810234424
PPEK01000002
Actinomycetota
Enteroscipio rubneri ResAG-96 [PPEK]
131836
131924
+
Leu
GAG
[ENA]
¡û
>W1810240634
PPTO01000003
Actinomycetota
Slackia isoflavoniconvertens OB21 GAM31 [PPTO]
200666
200754
+
Leu
GAG
[ENA]
¡û
>W1810240635
PPTO01000003
Actinomycetota
Slackia isoflavoniconvertens OB21 GAM31 [PPTO]
201095
201183
+
Leu
GAG
[ENA]
¡û
>W1810240788
PPTR01000007
Actinomycetota
Gordonibacter sp. 28C [PPTR]
8527
8439
-
Leu
GAG
[ENA]
¡û
>W1810240857
PPTS01000007
Actinomycetota
Gordonibacter pamelaeae 3C [PPTS]
98722
98634
-
Leu
GAG
[ENA]
¡û
>C10111621
CP001684
Actinomycetota
Slackia heliotrinireducens DSM 20476 [CP001684]
1161812
1161900
+
Leu
GAG
[Ensembl]
¡û
>C11108707
AP012211
Actinomycetota
Eggerthella sp. YY7918 [AP012211]
1421375
1421463
+
Leu
GAG
[Ensembl]
¡û
>C161103636
FP929047
Actinomycetota
Gordonibacter pamelaeae 7-10-1-b 7-10-1-bT [FP929047]
496041
495953
-
Leu
GAG
[Ensembl]
¡û
>W1610907079
LSCX01000011
Actinomycetota
Coriobacteriales bacterium DNF00809 [LSCX]
20963
20875
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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