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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37243 (45 seq.)
>W1711185748
LWNQ01000016
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
259593
259505
-
Leu
GAG
[ENA]
¡û
>W1711186346
LWOD01000031
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
152102
152190
+
Leu
GAG
[ENA]
¡û
>W131206287
ATFO01000008
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
164999
165087
+
Leu
GAG
[ENA]
¡û
>WENV180050099
MPLU02110675
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
221
135
-
Leu
GAG
[ENA]
¢þ
>WENV180183880
OAWQ01008505
[OAWQ] human gut metagenome; faeces
108
21
-
Leu
GAG
[ENA]
¢þ
>WENV180312594
OBJZ01000011
[OBJZ] human gut metagenome; fecal sample
372998
372911
-
Leu
GAG
[ENA]
¢þ
>WENV180554445
OCJN01001551
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
524
437
-
Leu
GAG
[ENA]
¢þ
>W141223010
BACW01000506
Actinomycetota
Curtobacterium sp. B8 [BACW]
2542
2456
-
Leu
GAG
[ENA]
¡û
>WENV182797413
OJSX01001493
[OJSX] human gut metagenome; human gut
386
299
-
Leu
GAG
[ENA]
¢þ
>WENV182812840
OJXV01000104
[OJXV] human gut metagenome; human gut
5364
5277
-
Leu
GAG
[ENA]
¢þ
>WENV182819744
OKAF01005913
[OKAF] human gut metagenome; human gut
245
332
+
Leu
GAG
[ENA]
¢þ
>WENV182825528
OKCK01000237
[OKCK] human gut metagenome; human gut
668
755
+
Leu
GAG
[ENA]
¢þ
>WENV182831680
OKEG01000129
[OKEG] human gut metagenome; human gut
21462
21549
+
Leu
GAG
[ENA]
¢þ
>WENV182839078
OKGZ01003318
[OKGZ] human gut metagenome; human gut
187
274
+
Leu
GAG
[ENA]
¢þ
>WENV182845666
OKJE01000529
[OKJE] human gut metagenome; human gut
40
127
+
Leu
GAG
[ENA]
¢þ
>WENV182855164
OKMY01000186
[OKMY] human gut metagenome; human gut
12052
11965
-
Leu
GAG
[ENA]
¢þ
>WENV182962609
OKWN01010726
[OKWN] human gut metagenome; stool
185
98
-
Leu
GAG
[ENA]
¢þ
>WENV183087990
OLJQ01001788
[OLJQ] human gut metagenome; human gut
806
719
-
Leu
GAG
[ENA]
¢þ
>W141400435
JDRS01000005
Actinomycetota
Dermabacter hominis 1368 [JDRS]
19126
19038
-
Leu
GAG
[ENA]
¡û
>WENV170738844
LULP01005399
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
956
870
-
Leu
GAG
[ENA]
¢þ
>WENV170954722
MJUI01033120
[MJUI] soil metagenome; viral particles from soil sample MG3
244
158
-
Leu
GAG
[ENA]
¢þ
>C181062046
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
148803
148717
-
Leu
GAG
-
¡û
>C181084624
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
2394640
2394726
+
Leu
GAG
-
¡û
>C181199731
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
1243425
1243338
-
Leu
GAG
-
¡û
>C191132689
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
1743179
1743265
+
Leu
GAG
-
¡û
>C191132690
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
1745492
1745578
+
Leu
GAG
-
¡û
>W1910321333
FSEE01000002
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
271544
271456
-
Leu
GAG
[ENA]
¡û
>W1911596828
PNHL01000007
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
58255
58169
-
Leu
GAG
[ENA]
¡û
>W1911709309
QPKK01000094
Actinomycetota
Desertihabitans aurantiacus CPCC 204711 [QPKK]
8212
8126
-
Leu
GAG
[ENA]
¡û
>W1911726660
QSWH01000005
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
353731
353818
+
Leu
GAG
[ENA]
¡û
>W1810089858
PGEZ01000002
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
153047
153133
+
Leu
GAG
[ENA]
¡û
>W1810187305
PKHM01000001
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
496365
496278
-
Leu
GAG
[ENA]
¡û
>W1810744403
QOUI01000013
Actinomycetota
Desertihabitans brevis 16Sb5-5 [QOUI]
66831
66917
+
Leu
GAG
[ENA]
¡û
>W1510015417
BBQZ01000002
Actinomycetota
Demequina salsinemoris NBRC 105323 [BBQZ]
675596
675508
-
Leu
GAG
[ENA]
¡û
>W1510015479
BBRA01000002
Actinomycetota
Demequina flava NBRC 105854 [BBRA]
41504
41592
+
Leu
GAG
[ENA]
¡û
>W1510015747
BBRG01000002
Actinomycetota
Demequina globuliformis NBRC 106266 [BBRG]
44583
44671
+
Leu
GAG
[ENA]
¡û
>W1511398133
JTDJ01000133
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
153468
153554
+
Leu
GAG
[ENA]
¡û
>C161039607
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1203573
1203661
+
Leu
GAG
[Ensembl]
¡û
>C161082873
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
3505394
3505480
+
Leu
GAG
[Ensembl]
¡û
>W1610069265
BCSI01000004
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
89096
89184
+
Leu
GAG
[ENA]
¡û
>W1610095036
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
159848
159936
+
Leu
GAG
[ENA]
¡û
>W1710050385
BBRK01000005
Actinomycetota
Demequina sp. NBRC 110054 [BBRK]
57539
57627
+
Leu
GAG
[ENA]
¡û
>W1710050516
BBRN01000004
Actinomycetota
Demequina sp. NBRC 110057 [BBRN]
687398
687310
-
Leu
GAG
[ENA]
¡û
>W1710066638
BCSI01000004
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
89096
89184
+
Leu
GAG
[ENA]
¡û
>W1710097831
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
159848
159936
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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