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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37244 (36 seq.)
>W1710881416
LMTB01000006
Actinomycetota
Dietzia timorensis [LMTB]
167812
167726
-
Leu
GAG
[ENA]
¡û
>W1711080715
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
967717
967631
-
Leu
GAG
[ENA]
¡û
>W1711081627
LSSV01000026
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
34819
34733
-
Leu
GAG
[ENA]
¡û
>W1711082313
LSTT01000353
Actinomycetota
Dietzia cinnamea [LSTT]
280906
280820
-
Leu
GAG
[ENA]
¡û
>W1711139731
LVFF01000023
Actinomycetota
Dietzia maris [LVFF]
51353
51267
-
Leu
GAG
[ENA]
¡û
>W1711187579
LWPP01000285
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
228
142
-
Leu
GAG
[ENA]
¡û
>W1711351219
MDCG01000065
Actinomycetota
Dietzia alimentaria [MDCG]
7294
7380
+
Leu
GAG
[ENA]
¡û
>C171044549
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
1795872
1795958
+
Leu
GAG
-
¡û
>W131099104
AOSR01000022
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
49550
49636
+
Leu
GAG
[ENA]
¡û
>W131219833
ATYW01000010
Actinomycetota
Glycomyces tenuis DSM 44171 [ATYW]
41802
41716
-
Leu
GAG
[ENA]
¡û
>WENV181170759
OEIV010084044
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
539
625
+
Leu
GAG
[ENA]
¢þ
>C181017348
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
1748256
1748342
+
Leu
GAG
-
¡û
>C181017397
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1820966
1821052
+
Leu
GAG
-
¡û
>C181107050
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
1759182
1759268
+
Leu
GAG
-
¡û
>C181148324
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
2943675
2943761
+
Leu
GAG
-
¡û
>W09109948
ABUS01000001
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [ABUS]
1107055
1106969
-
Leu
GAG
[ENA]
¡û
>W141702565
JMLO01000019
Actinomycetota
Rhodococcus sp. UNC363MFTsu5.1 [JMLO]
54408
54494
+
Leu
GAG
[ENA]
¡û
>W141758617
JNYS01000789
Actinomycetota
Glycomyces tenuis [JNYS]
544
630
+
Leu
GAG
[ENA]
¡û
>W1911278995
NTGA01000002
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
118276
118190
-
Leu
GAG
[ENA]
¡û
>W1810091086
PGGV01000015
Actinomycetota
Glycomyces xiaoerkulensis TRM 41368 [PGGV]
12919
12833
-
Leu
GAG
[ENA]
¡û
>W1810463935
PZZY01000003
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
406901
406815
-
Leu
GAG
[ENA]
¡û
>W1810580866
QETM01000023
Actinomycetota
Dietzia maris AMT [QETM]
29019
29105
+
Leu
GAG
[ENA]
¡û
>W1810721978
QNTT01000001
Actinomycetota
Dietzia maris SST1 [QNTT]
134698
134784
+
Leu
GAG
[ENA]
¡û
>C10112155
CP001778
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [CP001778]
4222264
4222350
+
Leu
GAG
[Ensembl]
¡û
>W11139520
AEKG01000145
Actinomycetota
Dietzia cinnamea P4 [AEKG]
2793
2707
-
Leu
GAG
[ENA]
¡û
>W11178776
AGFF01000023
Actinomycetota
Dietzia alimentaria 72 [AGFF]
435467
435381
-
Leu
GAG
[ENA]
¡û
>W1610069397
BCSL01000016
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
25803
25889
+
Leu
GAG
[ENA]
¡û
>W1610069907
BCSW01000016
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
14326
14240
-
Leu
GAG
[ENA]
¡û
>W1610743762
LMTB01000006
Actinomycetota
Dietzia timorensis [LMTB]
167812
167726
-
Leu
GAG
[ENA]
¡û
>W1610919582
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
967717
967631
-
Leu
GAG
[ENA]
¡û
>W1610920462
LSSV01000026
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
34819
34733
-
Leu
GAG
[ENA]
¡û
>W1610921098
LSTT01000353
Actinomycetota
Dietzia cinnamea [LSTT]
280906
280820
-
Leu
GAG
[ENA]
¡û
>W1610950739
LVFF01000023
Actinomycetota
Dietzia maris [LVFF]
51353
51267
-
Leu
GAG
[ENA]
¡û
>W1710066770
BCSL01000016
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
25803
25889
+
Leu
GAG
[ENA]
¡û
>W1710067280
BCSW01000016
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
14326
14240
-
Leu
GAG
[ENA]
¡û
>W1710534710
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2338398
2338312
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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