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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37245 (31 seq.)
>W1710881435
LMTB01000068
Actinomycetota
Dietzia timorensis [LMTB]
21621
21535
-
Ser
TGA
[ENA]
¡û
>W1711081629
LSSV01000027
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
79210
79122
-
Ser
TGA
[ENA]
¡û
>W1711082290
LSTT01000068
Actinomycetota
Dietzia cinnamea [LSTT]
7411
7325
-
Ser
TGA
[ENA]
¡û
>W1711139739
LVFF01000038
Actinomycetota
Dietzia maris [LVFF]
54781
54869
+
Ser
TGA
[ENA]
¡û
>W1711187574
LWPP01000172
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
6253
6339
+
Ser
TGA
[ENA]
¡û
>W1711351249
MDCG01000415
Actinomycetota
Dietzia alimentaria [MDCG]
10968
10880
-
Ser
TGA
[ENA]
¡û
>C171044534
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
312779
312865
+
Ser
TGA
-
¡û
>W131099116
AOSR01000033
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
797
711
-
Ser
TGA
[ENA]
¡û
>W131239456
BANR01000026
Actinomycetota
Gordonia aichiensis NBRC 108223 [BANR]
56084
56172
+
Ser
TGA
[ENA]
¡û
>WENV181169841
OEIV010011748
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2245
2158
-
Ser
TGA
[ENA]
¢þ
>WENV181389198
OFRM01097048
[OFRM] wastewater metagenome; Exp Tend VB 0WW
135
49
-
Ser
TGA
[ENA]
¢þ
>C181017330
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
465707
465793
+
Ser
TGA
-
¡û
>C181017379
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
398064
398151
+
Ser
TGA
-
¡û
>C181107033
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
359875
359962
+
Ser
TGA
-
¡û
>C181148306
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
1685136
1685222
+
Ser
TGA
-
¡û
>W09109085
ABTV01000012
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
75090
75176
+
Ser
TGA
[ENA]
¡û
>W1911278996
NTGA01000004
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
159213
159299
+
Ser
TGA
[ENA]
¡û
>W1911422548
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
2002029
2001942
-
Ser
TGA
[ENA]
¡û
>W1810463940
PZZY01000004
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
335363
335450
+
Ser
TGA
[ENA]
¡û
>W1810580855
QETM01000006
Actinomycetota
Dietzia maris AMT [QETM]
15797
15711
-
Ser
TGA
[ENA]
¡û
>W1810721990
QNTT01000007
Actinomycetota
Dietzia maris SST1 [QNTT]
65784
65871
+
Ser
TGA
[ENA]
¡û
>W11139543
AEKG01000388
Actinomycetota
Dietzia cinnamea P4 [AEKG]
9639
9553
-
Ser
TGA
[ENA]
¡û
>W11178749
AGFF01000005
Actinomycetota
Dietzia alimentaria 72 [AGFF]
148108
148196
+
Ser
TGA
[ENA]
¡û
>W1610069418
BCSL01000066
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
6212
6124
-
Ser
TGA
[ENA]
¡û
>W1610069919
BCSW01000038
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
6875
6789
-
Ser
TGA
[ENA]
¡û
>W1610743781
LMTB01000068
Actinomycetota
Dietzia timorensis [LMTB]
21621
21535
-
Ser
TGA
[ENA]
¡û
>W1610920464
LSSV01000027
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
79210
79122
-
Ser
TGA
[ENA]
¡û
>W1610921075
LSTT01000068
Actinomycetota
Dietzia cinnamea [LSTT]
7411
7325
-
Ser
TGA
[ENA]
¡û
>W1610950747
LVFF01000038
Actinomycetota
Dietzia maris [LVFF]
54781
54869
+
Ser
TGA
[ENA]
¡û
>W1710066791
BCSL01000066
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
6212
6124
-
Ser
TGA
[ENA]
¡û
>W1710067292
BCSW01000038
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
6875
6789
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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