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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37253 (73 seq.)
>W1710777602
LJBS01000041
Bacillota
Pediococcus acidilactici [LJBS]
7640
7553
-
Leu
AAG
[ENA]
¡û
>W1710915770
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
79012
78925
-
Leu
AAG
[ENA]
¡û
>W1711005290
LQNM01000007
Bacillota
Pediococcus pentosaceus [LQNM]
74252
74163
-
Leu
AAG
[ENA]
¡û
>W1711005583
LQNQ01000011
Bacillota
Pediococcus acidilactici [LQNQ]
3922
3835
-
Leu
AAG
[ENA]
¡û
>W1711005641
LQNR01000053
Bacillota
Pediococcus acidilactici [LQNR]
3922
3835
-
Leu
AAG
[ENA]
¡û
>W1711025285
LRBW01000018
Bacillota
Pediococcus acidilactici [LRBW]
3921
3834
-
Leu
AAG
[ENA]
¡û
>W1711068926
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
274401
274312
-
Leu
AAG
[ENA]
¡û
>W131146256
AQGT01000020
Bacillota
Pediococcus acidilactici D3 [AQGT]
5167
5254
+
Leu
AAG
[ENA]
¡û
>W1711258419
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
16880
16967
+
Leu
AAG
[ENA]
¡û
>W1711352492
MDDF01000140
Bacillota
Pediococcus acidilactici [MDDF]
142
55
-
Leu
AAG
[ENA]
¡û
>W131239208
BANK01000031
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
8314
8401
+
Leu
AAG
[ENA]
¡û
>W1711585747
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
715
802
+
Leu
AAG
[ENA]
¡û
>C171034341
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
1184050
1184137
+
Leu
AAG
-
¡û
>C171036808
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
1011455
1011368
-
Leu
AAG
-
¡û
>C171083290
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1717811
1717724
-
Leu
AAG
-
¡û
>C171119449
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
344434
344523
+
Leu
AAG
-
¡û
>C171119597
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1646195
1646108
-
Leu
AAG
-
¡û
>C171119654
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
1646067
1645980
-
Leu
AAG
-
¡û
>C171120457
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
1646205
1646118
-
Leu
AAG
-
¡û
>C171126467
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
336871
336960
+
Leu
AAG
-
¡û
>C017437
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1487204
1487116
-
Leu
AAG
[Ensembl]
¡û
>WENV180279403
OBHX01034797
[OBHX] metagenome; feces
840
752
-
Leu
AAG
[ENA]
¢þ
>WENV180334019
OBLF01003961
[OBLF] metagenome; feces
1733
1645
-
Leu
AAG
[ENA]
¢þ
>W141241950
CAHU01000004
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
12018
12107
+
Leu
AAG
[ENA]
¡û
>W141280120
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1392418
1392505
+
Leu
AAG
[ENA]
¡û
>WENV183238358
OLQY01030402
[OLQY] human gut metagenome; faeces
800
713
-
Leu
AAG
[ENA]
¢þ
>WENV183762346
PPYE01275516
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
8150
8237
+
Leu
AAG
[ENA]
¢þ
>WENV183788943
PPYF01371647
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5799
5712
-
Leu
AAG
[ENA]
¢þ
>WENV183790263
PPYF01411155
[PPYF] human gut metagenome; stool from patient with Crohn's disease
280329
280241
-
Leu
AAG
[ENA]
¢þ
>WENV183792328
PPYF01458525
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3895
3808
-
Leu
AAG
[ENA]
¢þ
>W141402976
JDVW01000008
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
280356
280267
-
Leu
AAG
[ENA]
¡û
>WENV170659210
JXWR01001502
[JXWR] soil metagenome; rice field; ambient CO2
11096
11185
+
Leu
AAG
[ENA]
¢þ
>C181042796
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
741642
741554
-
Leu
AAG
-
¡û
>C191023248
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1414048
1413960
-
Leu
AAG
-
¡û
>C191035355
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1582984
1582897
-
Leu
AAG
-
¡û
>C191106181
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
483178
483265
+
Leu
AAG
-
¡û
>C191135593
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1491106
1491019
-
Leu
AAG
-
¡û
>C191135652
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1607880
1607793
-
Leu
AAG
-
¡û
>C191137783
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
369183
369270
+
Leu
AAG
-
¡û
>W09101477
AAEV01000012
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
22931
22842
-
Leu
AAG
[ENA]
¡û
>W1910181664
BJMF01000003
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
195756
195669
-
Leu
AAG
[ENA]
¡û
>W1910373924
FUHV01000003
Bacillota
Pediococcus acidilactici S7 [FUHV]
73660
73573
-
Leu
AAG
[ENA]
¡û
>C141009506
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1451549
1451460
-
Leu
AAG
[Ensembl]
¡û
>W1911631288
PUFB01000016
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
15804
15892
+
Leu
AAG
[ENA]
¡û
>W1911696870
QNGC01000024
Bacillota
Pediococcus acidilactici GS1 [QNGC]
157888
157801
-
Leu
AAG
[ENA]
¡û
>W1911798498
QYRQ01000037
Bacillota
Pediococcus acidilactici WT [QYRQ]
157916
157829
-
Leu
AAG
[ENA]
¡û
>W1810000833
BEWQ01000004
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
15571
15659
+
Leu
AAG
[ENA]
¡û
>W1810049828
PCYQ01000002
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
16780
16867
+
Leu
AAG
[ENA]
¡û
>W10105144
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
298715
298628
-
Leu
AAG
[ENA]
¡û
>W10127365
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
296826
296739
-
Leu
AAG
[ENA]
¡û
>W11107464
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
298715
298628
-
Leu
AAG
[ENA]
¡û
>W11134853
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
296826
296739
-
Leu
AAG
[ENA]
¡û
>C161092316
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
584967
585056
+
Leu
AAG
[Ensembl]
¡û
>W121011508
AGKB01000010
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
299153
299066
-
Leu
AAG
[ENA]
¡û
>W1610057810
BBZC01000019
Bacillota
Pediococcus pentosaceus [BBZC]
77218
77129
-
Leu
AAG
[ENA]
¡û
>W1610527739
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
16754
16841
+
Leu
AAG
[ENA]
¡û
>W1610528407
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
15679
15768
+
Leu
AAG
[ENA]
¡û
>W1610529226
JQBX01000017
Bacillota
Pediococcus stilesii [JQBX]
15170
15258
+
Leu
AAG
[ENA]
¡û
>W1610529461
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
16753
16840
+
Leu
AAG
[ENA]
¡û
>W1610641788
LJBS01000041
Bacillota
Pediococcus acidilactici [LJBS]
7640
7553
-
Leu
AAG
[ENA]
¡û
>W1610650104
LJIU01000008
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
136999
136910
-
Leu
AAG
[ENA]
¡û
>W1610774009
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
79012
78925
-
Leu
AAG
[ENA]
¡û
>W1610855940
LQNM01000007
Bacillota
Pediococcus pentosaceus [LQNM]
74252
74163
-
Leu
AAG
[ENA]
¡û
>W1610856233
LQNQ01000011
Bacillota
Pediococcus acidilactici [LQNQ]
3922
3835
-
Leu
AAG
[ENA]
¡û
>W1610856291
LQNR01000053
Bacillota
Pediococcus acidilactici [LQNR]
3922
3835
-
Leu
AAG
[ENA]
¡û
>W1610873397
LRBW01000018
Bacillota
Pediococcus acidilactici [LRBW]
3921
3834
-
Leu
AAG
[ENA]
¡û
>W1610909496
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
274401
274312
-
Leu
AAG
[ENA]
¡û
>W1611020891
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
16880
16967
+
Leu
AAG
[ENA]
¡û
>W1710054509
BBZC01000019
Bacillota
Pediococcus pentosaceus [BBZC]
77218
77129
-
Leu
AAG
[ENA]
¡û
>W1710629370
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
16754
16841
+
Leu
AAG
[ENA]
¡û
>W1710629997
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
15679
15768
+
Leu
AAG
[ENA]
¡û
>W1710630816
JQBX01000017
Bacillota
Pediococcus stilesii [JQBX]
15170
15258
+
Leu
AAG
[ENA]
¡û
>W1710631051
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
16753
16840
+
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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