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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37278 (24 seq.)
>W1711434417
MIMZ01000012
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
82964
83052
+
Leu
TAA
[ENA]
¡û
>C171101769
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1630562
1630650
+
Leu
TAA
-
¡û
>WENV180176392
OAWD01000081
[OAWD] human gut metagenome; faeces
24523
24611
+
Leu
TAA
[ENA]
¢þ
>WENV180498288
OCAG01000047
[OCAG] human gut metagenome; faeces
41450
41538
+
Leu
TAA
[ENA]
¢þ
>WENV181346618
OFML01053532
[OFML] human gut metagenome; human gut
194
106
-
Leu
TAA
[ENA]
¢þ
>WENV181865727
OGWU01082626
[OGWU] human gut metagenome; faeces
135
223
+
Leu
TAA
[ENA]
¢þ
>WENV182403341
OIET01003096
[OIET] human gut metagenome; human gut
2000
2088
+
Leu
TAA
[ENA]
¢þ
>WENV182405377
OIEV01003662
[OIEV] human gut metagenome; human gut
2301
2389
+
Leu
TAA
[ENA]
¢þ
>WENV170692612
LGOV01016272
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
443
355
-
Leu
TAA
[ENA]
¢þ
>WENV170695489
LGVE01106481
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
706
794
+
Leu
TAA
[ENA]
¢þ
>WENV170696396
LGVF01016046
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
5189
5277
+
Leu
TAA
[ENA]
¢þ
>C191064443
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1902352
1902264
-
Leu
TAA
-
¡û
>C191219526
LR215983
Bacillota
Eubacterium limosum [LR215983]
3151544
3151456
-
Leu
TAA
-
¡û
>W1810609760
QGUD01000010
Bacillota
Eubacterium limosum 8486cho [QGUD]
71056
70968
-
Leu
TAA
[ENA]
¡û
>W1810871741
QUDF01000012
Bacillota
Eubacterium sp. AM05-23 [QUDF]
83511
83599
+
Leu
TAA
[ENA]
¡û
>C11108830
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3491336
3491248
-
Leu
TAA
[Ensembl]
¡û
>W1511480157
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
621729
621641
-
Leu
TAA
[ENA]
¡û
>W11144149
AEQN01000016
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
219724
219636
-
Leu
TAA
[ENA]
¡û
>C161037779
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
824681
824769
+
Leu
TAA
[Ensembl]
¡û
>W1710525035
FNJF01000009
Bacillota
Eubacterium maltosivorans limosum [FNJF]
59786
59874
+
Leu
TAA
[ENA]
¡û
>W1710530525
FNOU01000016
Bacillota
Eubacterium barkeri [FNOU]
39667
39755
+
Leu
TAA
[ENA]
¡û
>W1710533813
FNRK01000021
Bacillota
Eubacterium aggregans [FNRK]
14104
14016
-
Leu
TAA
[ENA]
¡û
>W1710571965
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
53089
53177
+
Leu
TAA
[ENA]
¡û
>W1710591265
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
368189
368101
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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