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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37279 (38 seq.)
>W1710809759
LKEU01000027
Bacillota
Acetobacterium wieringae [LKEU]
399214
399302
+
Ser
TGA
[ENA]
¡û
>W1711434434
MIMZ01000018
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
3984
4072
+
Ser
TGA
[ENA]
¡û
>W1711503284
MKTL01000024
Bacillota
Clostridiales bacterium 38-18 [MKTL]
185514
185426
-
Ser
TGA
[ENA]
¡û
>C171101764
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
900505
900593
+
Ser
TGA
-
¡û
>W131092242
AOIG01000039
Bacillota
Paenibacillus sp. A9 [AOIG]
18424
18336
-
Ser
TGA
[ENA]
¡û
>WENV180176647
OAWD01000457
[OAWD] human gut metagenome; faeces
24141
24053
-
Ser
TGA
[ENA]
¢þ
>WENV180345602
OBLN01000900
[OBLN] sediment metagenome; sediment
6621
6709
+
Ser
TGA
[ENA]
¢þ
>WENV180498575
OCAG01000522
[OCAG] human gut metagenome; faeces
3553
3641
+
Ser
TGA
[ENA]
¢þ
>WENV180504329
OCAN01001560
[OCAN] human gut metagenome; faeces
3839
3927
+
Ser
TGA
[ENA]
¢þ
>W141080213
ATMS01000017
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
86235
86147
-
Ser
TGA
[ENA]
¡û
>WENV181346187
OFML01006260
[OFML] human gut metagenome; human gut
3035
3123
+
Ser
TGA
[ENA]
¢þ
>W141150089
AXAC01000030
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
56433
56521
+
Ser
TGA
[ENA]
¡û
>W08006058
ABIL02000006
Bacillota
Anaerofustis stercorihominis DSM 17244 [ABIL]
1233115
1233030
-
Ser
TGA
[ENA]
¡û
>WENV182403337
OIET01003030
[OIET] human gut metagenome; human gut
763
675
-
Ser
TGA
[ENA]
¢þ
>WENV182405439
OIEV01004794
[OIEV] human gut metagenome; human gut
172
84
-
Ser
TGA
[ENA]
¢þ
>W141276258
JADQ01000029
Bacillota
Paenibacillus sp. J14 [JADQ]
8763
8851
+
Ser
TGA
[ENA]
¡û
>WENV182836547
OKFX01004095
[OKFX] human gut metagenome; human gut
517
429
-
Ser
TGA
[ENA]
¢þ
>WENV170695739
LGVE01164961
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
19039
19127
+
Ser
TGA
[ENA]
¢þ
>WENV170699860
LGVF01676817
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
18942
19030
+
Ser
TGA
[ENA]
¢þ
>C191064438
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
2576967
2576879
-
Ser
TGA
-
¡û
>C191106136
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
4339831
4339919
+
Ser
TGA
-
¡û
>C191219521
LR215983
Bacillota
Eubacterium limosum [LR215983]
3889153
3889065
-
Ser
TGA
-
¡û
>W1911718423
QQWI01000014
Bacillota
Fusibacter sp. A1 [QQWI]
61329
61417
+
Ser
TGA
[ENA]
¡û
>W1911718442
QQWI01000015
Bacillota
Fusibacter sp. A1 [QQWI]
4824
4912
+
Ser
TGA
[ENA]
¡û
>W1810609772
QGUD01000018
Bacillota
Eubacterium limosum 8486cho [QGUD]
14120
14032
-
Ser
TGA
[ENA]
¡û
>W1810871700
QUDF01000001
Bacillota
Eubacterium sp. AM05-23 [QUDF]
3883
3971
+
Ser
TGA
[ENA]
¡û
>W1810889491
QUSM01000006
Bacillota
Anaerofustis stercorihominis AM25-6 [QUSM]
95549
95461
-
Ser
TGA
[ENA]
¡û
>C11108796
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
188068
188156
+
Ser
TGA
[Ensembl]
¡û
>W1511480181
JWIS01000019
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
14071
13983
-
Ser
TGA
[ENA]
¡û
>W1511499762
JXAL01000029
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
6715
6803
+
Ser
TGA
[ENA]
¡û
>W1511577374
LAQQ01000021
Bacillota
Paenibacillus dauci H9 [LAQQ]
38059
37971
-
Ser
TGA
[ENA]
¡û
>C121003889
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
737658
737746
+
Ser
TGA
[Ensembl]
¡û
>C161037774
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
207539
207627
+
Ser
TGA
[Ensembl]
¡û
>W1710525053
FNJF01000029
Bacillota
Eubacterium maltosivorans limosum [FNJF]
33994
33906
-
Ser
TGA
[ENA]
¡û
>W1710571981
FOWI01000007
Bacillota
Eubacterium callanderi [FOWI]
361268
361180
-
Ser
TGA
[ENA]
¡û
>W1710582317
FQTU01000017
Bacillota
Alkalibacter saccharofermentans DSM 14828 [FQTU]
5238
5326
+
Ser
TGA
[ENA]
¡û
>W1710591302
FRBP01000010
Bacillota
Eubacterium callanderi [FRBP]
196078
195990
-
Ser
TGA
[ENA]
¡û
>W1710607590
FXAE01000034
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
44871
44783
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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