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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372872 (86 seq.)
>W1710802239
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
3358
3433
+
Gly
TCC
[ENA]
¡û
>W1711043783
LRML01000003
Bacteroidota
Rufibacter roseus [LRML]
437911
437838
-
Gly
TCC
[ENA]
¡û
>W1711043824
LRMM01000011
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
48094
48167
+
Gly
TCC
[ENA]
¡û
>W131146339
AQHR01000107
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
149718
149643
-
Gly
TCC
[ENA]
¡û
>W131223085
AUBU01000002
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
57691
57766
+
Gly
TCC
[ENA]
¡û
>W131223226
AUBX01000016
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
305465
305540
+
Gly
TCC
[ENA]
¡û
>W1711707875
MSSV01000004
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
165299
165372
+
Gly
TCC
[ENA]
¡û
>W1711751662
MUNY01000033
Bacteroidota
Algoriphagus sp. A40 [MUNY]
6238
6311
+
Gly
TCC
[ENA]
¡û
>WENV180013945
FPIC01012768
[FPIC] soil metagenome; Soil
130
57
-
Gly
TCC
[ENA]
¢þ
>WENV180103471
OAPA01043932
[OAPA] marine metagenome; ENVO:00002010
192
119
-
Gly
TCC
[ENA]
¢þ
>WENV180362826
OBNX01048512
[OBNX] marine metagenome; ENVO:00002010
230
157
-
Gly
TCC
[ENA]
¢þ
>WENV180381106
OBOR01129168
[OBOR] marine metagenome; ENVO 00002227
213
286
+
Gly
TCC
[ENA]
¢þ
>WENV180381629
OBOS01005495
[OBOS] marine metagenome; ENVO 00002150
28
101
+
Gly
TCC
[ENA]
¢þ
>WENV180388068
OBPG01042113
[OBPG] marine metagenome; Sterile flask
338
411
+
Gly
TCC
[ENA]
¢þ
>WENV180396082
OBPU01028547
[OBPU] marine metagenome; ENVO:00002010
233
306
+
Gly
TCC
[ENA]
¢þ
>W141039115
ALWO02000011
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
192996
192921
-
Gly
TCC
[ENA]
¡û
>W141043705
AMGM01000003
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
74173
74098
-
Gly
TCC
[ENA]
¡û
>WENV181187990
OEOE01009744
[OEOE] activated sludge metagenome; Activated Sludge
598
523
-
Gly
TCC
[ENA]
¢þ
>WENV181226985
OFDN01000725
[OFDN] hot springs metagenome; Water
4175
4248
+
Gly
TCC
[ENA]
¢þ
>WENV181308082
OFIS01000193
[OFIS] sludge metagenome; sludge
39153
39226
+
Gly
TCC
[ENA]
¢þ
>WENV181308242
OFIS01001443
[OFIS] sludge metagenome; sludge
2401
2328
-
Gly
TCC
[ENA]
¢þ
>WENV181368472
OFQL01007684
[OFQL] freshwater metagenome; Freshwater Lake
522
449
-
Gly
TCC
[ENA]
¢þ
>WENV181369586
OFQP01009888
[OFQP] freshwater metagenome; Freshwater Lake
908
835
-
Gly
TCC
[ENA]
¢þ
>WENV181370600
OFQT01000606
[OFQT] freshwater metagenome; Freshwater Lake
2427
2354
-
Gly
TCC
[ENA]
¢þ
>WENV181372341
OFQW01048613
[OFQW] wastewater metagenome; Exp Tend NO 90WW
497
570
+
Gly
TCC
[ENA]
¢þ
>W141151923
AXBK01000004
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
322072
321999
-
Gly
TCC
[ENA]
¡û
>WENV181837905
OGVL01013772
[OGVL] freshwater metagenome; freshwater
107
34
-
Gly
TCC
[ENA]
¢þ
>WENV181847730
OGVY01058960
[OGVY] freshwater metagenome; freshwater
274
347
+
Gly
TCC
[ENA]
¢þ
>W141278914
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
3819687
3819762
+
Gly
TCC
[ENA]
¡û
>WENV183617785
OOEG01100901
[OOEG] marine metagenome; sea ice
209
136
-
Gly
TCC
[ENA]
¢þ
>WENV183736056
PJUC01000007
[PJUC] soil metagenome; Soil enriched on filter paper
122388
122461
+
Gly
TCC
[ENA]
¢þ
>WENV183742374
PJUH01018018
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
464
391
-
Gly
TCC
[ENA]
¢þ
>WENV170160314
CEOK01132567
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
55
128
+
Gly
TCC
[ENA]
¢þ
>WENV170274326
CERM01010390
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2424
2351
-
Gly
TCC
[ENA]
¢þ
>WENV170399856
CEUE01051200
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
275
348
+
Gly
TCC
[ENA]
¢þ
>WENV170569916
FLMP01349683
[FLMP] seawater metagenome; seawater
305
232
-
Gly
TCC
[ENA]
¢þ
>WENV170574525
FLYM01053979
[FLYM] hot springs metagenome; Sediment
211
284
+
Gly
TCC
[ENA]
¢þ
>WENV170641960
JFJP01038308
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
12952
12877
-
Gly
TCC
[ENA]
¢þ
>WENV170770522
LXNH01109646
[LXNH] seawater metagenome; marine seawater
78
5
-
Gly
TCC
[ENA]
¢þ
>WENV170871186
MDTB01202450
[MDTB] marine metagenome; seawater
1054
981
-
Gly
TCC
[ENA]
¢þ
>WENV170896446
MDTD01095523
[MDTD] marine metagenome; seawater
2023
2098
+
Gly
TCC
[ENA]
¢þ
>WENV170985167
MWVW01034065
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
250
177
-
Gly
TCC
[ENA]
¢þ
>C181090214
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
2385824
2385897
+
Gly
TCC
-
¡û
>C191175214
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
273683
273610
-
Gly
TCC
-
¡û
>C191189189
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
274644
274571
-
Gly
TCC
-
¡û
>W09108604
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
2313705
2313632
-
Gly
TCC
[ENA]
¡û
>W1910693699
MDGR01000007
Bacteroidota
Reichenbachiella sp. 5M10 [MDGR]
3540537
3540464
-
Gly
TCC
[ENA]
¡û
>W1910805081
MTKN01000003
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
47612
47539
-
Gly
TCC
[ENA]
¡û
>W1910932892
NIUC01000002
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
594164
594091
-
Gly
TCC
[ENA]
¡û
>W1911787348
QXZY01000007
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
228258
228185
-
Gly
TCC
[ENA]
¡û
>W1810090174
PGFG01000001
Bacteroidota
Thermoflavifilum aggregans DSM 27268 [PGFG]
2407090
2407017
-
Gly
TCC
[ENA]
¡û
>W1810265794
PQVF01000002
Bacteroidota
Solitalea longa HR-AV [PQVF]
173118
173045
-
Gly
TCC
[ENA]
¡û
>W1810393027
PYAW01000002
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
394949
395022
+
Gly
TCC
[ENA]
¡û
>W1810400073
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
3272551
3272478
-
Gly
TCC
[ENA]
¡û
>W1810532570
QCYK01000002
Bacteroidota
Chitinophaga parva LY-1 [QCYK]
269335
269408
+
Gly
TCC
[ENA]
¡û
>W1810594471
QFZQ01000007
Bacteroidota
Reichenbachiella versicolor DC003 [QFZQ]
139184
139111
-
Gly
TCC
[ENA]
¡û
>W1810606272
QGOL01000008
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
99673
99600
-
Gly
TCC
[ENA]
¡û
>W1810682167
QKTX01000006
Bacteroidota
Algoriphagus aquaeductus T4 [QKTX]
120640
120713
+
Gly
TCC
[ENA]
¡û
>W1810693474
QLLK01000005
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
213485
213558
+
Gly
TCC
[ENA]
¡û
>W1810693537
QLLL01000009
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
54977
54904
-
Gly
TCC
[ENA]
¡û
>W1810694423
QLMA01000001
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
386434
386507
+
Gly
TCC
[ENA]
¡û
>W1810695383
QLNL01000002
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
813558
813485
-
Gly
TCC
[ENA]
¡û
>W1810705053
QMIK01000003
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
471526
471599
+
Gly
TCC
[ENA]
¡û
>W1810762379
QPMM01000009
Bacteroidota
Chitinophaga silvatica GDMCC 1.1288 [QPMM]
128160
128233
+
Gly
TCC
[ENA]
¡û
>W1810885320
QUNF01000032
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
15493
15420
-
Gly
TCC
[ENA]
¡û
>SRA1051614
SRR035098.38866
454 Sequencing (SRP001819)
393
318
-
Gly
TCC
[SRA]
>ENV09000315
ABSN01049542
Freshwater sediment metagenome lwFormaldehyde_C1
167
242
+
Gly
TCC
[ENA]
¡û
>ENV09003838
ADGO01191289
Compost metagenome contig00001
215
142
-
Gly
TCC
[ENA]
¡û
>C11105719
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
3016278
3016353
+
Gly
TCC
[Ensembl]
¡û
>C161003265
CP004371
Bacteroidota
Flammeovirgaceae bacterium 311 [CP004371]
2273947
2273874
-
Gly
TCC
[Ensembl]
¡û
>W121017843
AGSC01000039
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
85149
85222
+
Gly
TCC
[ENA]
¡û
>W1610666096
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
3358
3433
+
Gly
TCC
[ENA]
¡û
>W1610885082
LRML01000003
Bacteroidota
Rufibacter roseus [LRML]
437911
437838
-
Gly
TCC
[ENA]
¡û
>W1610885123
LRMM01000011
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
48094
48167
+
Gly
TCC
[ENA]
¡û
>W1710509408
FMXE01000021
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
47938
48011
+
Gly
TCC
[ENA]
¡û
>W1710513380
FNAC01000005
Bacteroidota
Algoriphagus faecimaris [FNAC]
81109
81184
+
Gly
TCC
[ENA]
¡û
>W1710520398
FNFO01000010
Bacteroidota
Catalinimonas alkaloidigena [FNFO]
76116
76043
-
Gly
TCC
[ENA]
¡û
>W1710532184
FNQC01000002
Bacteroidota
Rhodonellum ikkaensis [FNQC]
487779
487854
+
Gly
TCC
[ENA]
¡û
>W1710555314
FOJG01000002
Bacteroidota
Chitinophaga arvensicola [FOJG]
3561648
3561575
-
Gly
TCC
[ENA]
¡û
>W1710562661
FOPC01000007
Bacteroidota
Algoriphagus hitonicola [FOPC]
117417
117492
+
Gly
TCC
[ENA]
¡û
>W1710577977
FPBF01000002
Bacteroidota
Algoriphagus locisalis [FPBF]
199934
199861
-
Gly
TCC
[ENA]
¡û
>W1710579439
FPCJ01000001
Bacteroidota
Thermoflavifilum thermophilum thermophila [FPCJ]
1982841
1982914
+
Gly
TCC
[ENA]
¡û
>W1710593069
FRCY01000009
Bacteroidota
Cyclobacterium lianum [FRCY]
83947
84022
+
Gly
TCC
[ENA]
¡û
>W1710594237
FSRC01000004
Bacteroidota
Algoriphagus halophilus [FSRC]
321655
321730
+
Gly
TCC
[ENA]
¡û
>W1710599286
FTOP01000008
Bacteroidota
Belliella pelovolcani [FTOP]
100125
100050
-
Gly
TCC
[ENA]
¡û
>W1710606940
FWYF01000003
Bacteroidota
Reichenbachiella faecimaris [FWYF]
442219
442292
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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