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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.373233 (30 seq.)
>W1710793039
LJOW01000201
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
3847
3772
-
Ala
TGC
[ENA]
¡û
>W1710865523
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
817545
817620
+
Ala
TGC
[ENA]
¡û
>W1710873834
LMNC01000003
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
432452
432527
+
Ala
TGC
[ENA]
¡û
>w018509
AATH01000009
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
17964
18039
+
Ala
TGC
[ENA]
¡û
>WENV180106072
OAPE01017198
[OAPE] marine metagenome; Sterivex cartridges
37
112
+
Ala
TGC
[ENA]
¢þ
>W08010813
ABRU01000014
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
13763
13838
+
Ala
TGC
[ENA]
¡û
>W08010848
ABRU01000050
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
117126
117054
-
Ala
TGC
[ENA]
¡û
>WENV181314138
OFJJ01001151
[OFJJ] marine metagenome; seawater
1627
1702
+
Ala
TGC
[ENA]
¢þ
>WENV181318210
OFJZ01004918
[OFJZ] marine metagenome; seawater
1129
1054
-
Ala
TGC
[ENA]
¢þ
>WENV181383864
OFRH01000013
[OFRH] wastewater metagenome; Exp Tend NO 100WW
17557
17632
+
Ala
TGC
[ENA]
¢þ
>WENV181403894
OFUB01031346
[OFUB] marine metagenome; seawater
380
455
+
Ala
TGC
[ENA]
¢þ
>WENV183738887
PJUE01000353
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
947
1022
+
Ala
TGC
[ENA]
¢þ
>WENV183740880
PJUF01015097
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
578
653
+
Ala
TGC
[ENA]
¢þ
>WENV170136907
CENV01096879
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1
76
+
Ala
TGC
[ENA]
¢þ
>WENV170195619
CEPJ01168927
[CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
333
408
+
Ala
TGC
[ENA]
¢þ
>WENV170574434
FLYM01037414
[FLYM] hot springs metagenome; Sediment
365
440
+
Ala
TGC
[ENA]
¢þ
>WENV170658946
JUGB01000854
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
2189
2114
-
Ala
TGC
[ENA]
¢þ
>WENV170668025
LADL02000261
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
1771
1696
-
Ala
TGC
[ENA]
¢þ
>C191189108
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
935910
935985
+
Ala
TGC
-
¡û
>C191189111
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
942821
942896
+
Ala
TGC
-
¡û
>W141712461
JMQR01000157
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
3517
3442
-
Ala
TGC
[ENA]
¡û
>C10102212
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2980151
2980076
-
Ala
TGC
[Ensembl]
¡û
>C10102215
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2753863
2753788
-
Ala
TGC
[Ensembl]
¡û
>C161089090
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
490123
490198
+
Ala
TGC
[Ensembl]
¡û
>C161089110
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
2803892
2803967
+
Ala
TGC
[Ensembl]
¡û
>W1610074239
BCWM01000033
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
3422
3347
-
Ala
TGC
[ENA]
¡û
>W1610657043
LJOW01000201
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
3847
3772
-
Ala
TGC
[ENA]
¡û
>W1610727869
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
817545
817620
+
Ala
TGC
[ENA]
¡û
>W1610736180
LMNC01000003
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
432452
432527
+
Ala
TGC
[ENA]
¡û
>W1710071357
BCWM01000033
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
3422
3347
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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