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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.373324 (9 seq.)
>WENV180259728
OBEQ011133302
[OBEQ] groundwater metagenome; groundwater
1172
1099
-
Lys
TTT
[ENA]
¢þ
>WENV181375112
OFQY01047688
[OFQY] wastewater metagenome; Exp Tend VB 10WW
539
466
-
Lys
TTT
[ENA]
¢þ
>WENV181381010
OFRE01019668
[OFRE] wastewater metagenome; Exp Tend NO 50WW
1047
1120
+
Lys
TTT
[ENA]
¢þ
>WENV181383159
OFRG01014560
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
526
453
-
Lys
TTT
[ENA]
¢þ
>WENV181390534
OFRO01062403
[OFRO] wastewater metagenome; Exp Tend NO 10WW
74
-1
-
Lys
TTT
[ENA]
¢þ
>WENV183694688
ORMF012275022
[ORMF] groundwater metagenome; groundwater
1498
1571
+
Lys
TTT
[ENA]
¢þ
>W1910707424
MFHI01000038
Unclassified
Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_43_13 [MFHI]
4400
4473
+
Lys
TTT
[ENA]
¡û
>W1910707857
MFHW01000033
Unclassified
Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_12_FULL_44_42 [MFHW]
26525
26452
-
Lys
TTT
[ENA]
¡û
>W1910708580
MFIS01000021
Unclassified
Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_12_FULL_44_32 [MFIS]
39897
39824
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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