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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.373328 (4 seq.)
>WENV181368239
OFQK01007793
[OFQK] freshwater metagenome; Freshwater Lake
452
379
-
Lys
TTT
[ENA]
¢þ
>WENV181383230
OFRG01017615
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
1261
1188
-
Lys
TTT
[ENA]
¢þ
>WENV181383817
OFRG01079421
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
138
211
+
Lys
TTT
[ENA]
¢þ
>WENV170554695
CXWK01085959
[CXWK] wastewater metagenome; activated sludge
963
1036
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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