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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.373668 (10 seq.)
>WENV181345106
OFMK01026362
[OFMK] human gut metagenome; human gut
400
476
+
Asn
GTT
[ENA]
¢þ
>WENV181527766
OGHK01007281
[OGHK] metagenome; Human gut stool
238
314
+
Asn
GTT
[ENA]
¢þ
>WENV182281966
OHVE01000937
[OHVE] human gut metagenome; feces
480
554
+
Asn
GTT
[ENA]
¢þ
>WENV182286680
OHVP01001313
[OHVP] human gut metagenome; feces
5108
5033
-
Asn
GTT
[ENA]
¢þ
>WENV182373061
OICY01012546
[OICY] human gut metagenome; feces
238
314
+
Asn
GTT
[ENA]
¢þ
>WENV182427746
OIHW01006583
[OIHW] human gut metagenome; human gut
265
341
+
Asn
GTT
[ENA]
¢þ
>WENV182503372
OIUO01003633
[OIUO] human gut metagenome; human gut
2617
2541
-
Asn
GTT
[ENA]
¢þ
>WENV183022720
OLFR01003454
[OLFR] human gut metagenome; human gut
2663
2587
-
Asn
GTT
[ENA]
¢þ
>WENV183047129
OLGF01002361
[OLGF] human gut metagenome; faeces
93
169
+
Asn
GTT
[ENA]
¢þ
>WENV183762062
PPYE01272945
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
792
716
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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