This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37421 (50 seq.)
>W1711409487
MGOS01000119
Bacillota
Clostridiales bacterium GWB2_37_7 [MGOS]
34426
34514
+
Leu
TAA
[ENA]
¡û
>C171064246
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590062
2590150
+
Leu
TAA
-
¡û
>C171064274
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618226
2618314
+
Leu
TAA
-
¡û
>C171064290
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2953605
2953693
+
Leu
TAA
-
¡û
>C171064310
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
716232
716144
-
Leu
TAA
-
¡û
>C171064344
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695991
695903
-
Leu
TAA
-
¡û
>C171109193
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1395888
1395976
+
Leu
TAA
-
¡û
>C171109221
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1424051
1424139
+
Leu
TAA
-
¡û
>C171109237
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1759430
1759518
+
Leu
TAA
-
¡û
>C171109252
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4108784
4108696
-
Leu
TAA
-
¡û
>C171109286
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4088543
4088455
-
Leu
TAA
-
¡û
>C000796
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1842465
1842553
+
Leu
TAA
[Ensembl]
¡û
>C000824
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4446995
4446907
-
Leu
TAA
[Ensembl]
¡û
>C000868
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4430544
4430456
-
Leu
TAA
[Ensembl]
¡û
>w017064
AAQV01000074
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
2126
2036
-
Leu
TAA
[ENA]
¡û
>w017027
AAQV01000054
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
7532
7442
-
Leu
TAA
[ENA]
¡û
>w016998
AAQV01000003
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
106589
106499
-
Leu
TAA
[ENA]
¡û
>w010418
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
4498
4588
+
Leu
TAA
[ENA]
¡û
>w010394
AAKU01000026
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
970
1060
+
Leu
TAA
[ENA]
¡û
>w010379
AAKU01000002
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1096
1186
+
Leu
TAA
[ENA]
¡û
>WENV180094577
MTBK01016194
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5792
5704
-
Leu
TAA
[ENA]
¢þ
>WENV180345847
OBLN01007557
[OBLN] sediment metagenome; sediment
2575
2663
+
Leu
TAA
[ENA]
¢þ
>W08006045
ABIL02000005
Bacillota
Anaerofustis stercorihominis DSM 17244 [ABIL]
465243
465331
+
Leu
TAA
[ENA]
¡û
>W08006065
ABIL02000006
Bacillota
Anaerofustis stercorihominis DSM 17244 [ABIL]
1209170
1209085
-
Leu
TAA
[ENA]
¡û
>C08000760
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2604880
2604795
-
Leu
TAA
[Ensembl]
¡û
>C08000773
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2598240
2598155
-
Leu
TAA
[Ensembl]
¡û
>C08000781
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1924327
1924242
-
Leu
TAA
[Ensembl]
¡û
>WENV170006056
AMQJ01019387
[AMQJ] sediment metagenome; subsurface aquifer sediment
452
540
+
Leu
TAA
[ENA]
¢þ
>WENV170561382
CZCA01007651
[CZCA] anaerobic digester metagenome; anaerobic digester
1109
1197
+
Leu
TAA
[ENA]
¢þ
>WENV170670130
LAHS01058120
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
154
242
+
Leu
TAA
[ENA]
¢þ
>WENV170674846
LCWY01009847
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
548
460
-
Leu
TAA
[ENA]
¢þ
>WENV170674984
LCWZ01000298
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
441
529
+
Leu
TAA
[ENA]
¢þ
>WENV170675204
LCWZ01015868
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
179
267
+
Leu
TAA
[ENA]
¢þ
>WENV170675297
LCWZ01035280
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
423
335
-
Leu
TAA
[ENA]
¢þ
>WENV170675433
LCWZ01071815
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
179
267
+
Leu
TAA
[ENA]
¢þ
>WENV170721721
LSQX01201957
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
538
450
-
Leu
TAA
[ENA]
¢þ
>WENV170723122
LSQX01255570
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
141
229
+
Leu
TAA
[ENA]
¢þ
>WENV170784180
MCHG01000087
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
21477
21389
-
Leu
TAA
[ENA]
¢þ
>W141561142
JHYF01000002
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
435
523
+
Leu
TAA
[ENA]
¡û
>W1910211425
FMDO01000019
Bacillota
Proteiniborus sp. DW1 [FMDO]
89
177
+
Leu
TAA
[ENA]
¡û
>W1910548217
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186906
186818
-
Leu
TAA
[ENA]
¡û
>W1910548233
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175859
175771
-
Leu
TAA
[ENA]
¡û
>W1910548266
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
7
95
+
Leu
TAA
[ENA]
¡û
>C151057225
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166639
1166727
+
Leu
TAA
[Ensembl]
¡û
>C151057242
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1178178
1178266
+
Leu
TAA
[Ensembl]
¡û
>C151057257
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1597470
1597558
+
Leu
TAA
[Ensembl]
¡û
>C151057270
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
3724707
3724619
-
Leu
TAA
[Ensembl]
¡û
>W1511527528
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
266631
266719
+
Leu
TAA
[ENA]
¡û
>W1710520431
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
541701
541613
-
Leu
TAA
[ENA]
¡û
>W1710531806
FNPV01000001
Bacillota
Tindallia californiensis [FNPV]
454396
454308
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK