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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.375080 (63 seq.)
>W1711147996
LVKD01000013
Bacillota
Ligilactobacillus aviarius [LVKD]
29234
29161
-
Glu
TTC
[ENA]
¡û
>W1711148008
LVKD01000033
Bacillota
Ligilactobacillus aviarius [LVKD]
401
474
+
Glu
TTC
[ENA]
¡û
>W1711148044
LVKD01000068
Bacillota
Ligilactobacillus aviarius [LVKD]
323
250
-
Glu
TTC
[ENA]
¡û
>W1711148174
LVKG01000026
Bacillota
Ligilactobacillus aviarius [LVKG]
27386
27313
-
Glu
TTC
[ENA]
¡û
>W1711148175
LVKG01000026
Bacillota
Ligilactobacillus aviarius [LVKG]
27280
27207
-
Glu
TTC
[ENA]
¡û
>W1711148194
LVKG01000027
Bacillota
Ligilactobacillus aviarius [LVKG]
1501
1574
+
Glu
TTC
[ENA]
¡û
>W1711148211
LVKG01000063
Bacillota
Ligilactobacillus aviarius [LVKG]
44858
44785
-
Glu
TTC
[ENA]
¡û
>W1711192902
LWUD01000010
Bacillota
Ligilactobacillus aviarius [LWUD]
226
299
+
Glu
TTC
[ENA]
¡û
>W1711192928
LWUD01000019
Bacillota
Ligilactobacillus aviarius [LWUD]
1628
1701
+
Glu
TTC
[ENA]
¡û
>W1711192934
LWUD01000020
Bacillota
Ligilactobacillus aviarius [LWUD]
415
488
+
Glu
TTC
[ENA]
¡û
>W1711193020
LWUF01000022
Bacillota
Ligilactobacillus aviarius [LWUF]
341
414
+
Glu
TTC
[ENA]
¡û
>W1711193040
LWUF01000027
Bacillota
Ligilactobacillus aviarius [LWUF]
571
498
-
Glu
TTC
[ENA]
¡û
>W1711193056
LWUF01000040
Bacillota
Ligilactobacillus aviarius [LWUF]
494
567
+
Glu
TTC
[ENA]
¡û
>W1711686439
MSBB01000003
Bacillota
Lentilactobacillus parabuchneri [MSBB]
63939
63866
-
Glu
TTC
[ENA]
¡û
>W1711686465
MSBB01000004
Bacillota
Lentilactobacillus parabuchneri [MSBB]
114341
114268
-
Glu
TTC
[ENA]
¡û
>W1711686744
MSBG01000002
Bacillota
Lentilactobacillus parabuchneri [MSBG]
114334
114261
-
Glu
TTC
[ENA]
¡û
>W1711686750
MSBG01000015
Bacillota
Lentilactobacillus parabuchneri [MSBG]
31921
31994
+
Glu
TTC
[ENA]
¡û
>WENV170659303
JXWR01003231
[JXWR] soil metagenome; rice field; ambient CO2
696
769
+
Glu
TTC
[ENA]
¢þ
>C191135644
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1857313
1857242
-
Glu
TTC
-
¡û
>W1911551310
OVSN01000007
Bacillota
Lentilactobacillus raoultii Marseille-P4006 [OVSN]
385
458
+
Glu
TTC
[ENA]
¡û
>W1911551338
OVSN01000007
Bacillota
Lentilactobacillus raoultii Marseille-P4006 [OVSN]
280721
280794
+
Glu
TTC
[ENA]
¡û
>C151003275
AP014808
Bacillota
Lactobacillus acetotolerans NBRC 13120 [AP014808]
501093
501167
+
Glu
TTC
[Ensembl]
¡û
>C151089937
CP012034
Bacillota
Companilactobacillus ginsenosidimutans EMML 3041 [CP012034]
872413
872340
-
Glu
TTC
[Ensembl]
¡û
>C151089950
CP012034
Bacillota
Companilactobacillus ginsenosidimutans EMML 3041 [CP012034]
800087
800013
-
Glu
TTC
[Ensembl]
¡û
>C153000090
AP014808
Bacillota
Lactobacillus acetotolerans NBRC 13120 [AP014808]
480244
480317
+
Glu
TTC
[Ensembl]
¡û
>W1511505469
JXLH01000007
Bacillota
Lactobacillus kimbladii Hma2 [JXLH]
1762
1835
+
Glu
TTC
[ENA]
¡û
>W1511505489
JXLH01000015
Bacillota
Lactobacillus kimbladii Hma2 [JXLH]
225588
225516
-
Glu
TTC
[ENA]
¡û
>W121044068
AHZA01000784
Bacillota
Liquorilactobacillus vini JP7.8.9 [AHZA]
258
185
-
Glu
TTC
[ENA]
¡û
>W1610031780
AYZC01000015
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
31395
31321
-
Glu
TTC
[ENA]
¡û
>W1610031883
AYZE01000010
Bacillota
Liquorilactobacillus cacaonum DSM 21116 [AYZE]
256
329
+
Glu
TTC
[ENA]
¡û
>W1610031915
AYZE01000015
Bacillota
Liquorilactobacillus cacaonum DSM 21116 [AYZE]
269834
269763
-
Glu
TTC
[ENA]
¡û
>W1610032467
AYZR01000007
Bacillota
Lentilactobacillus senioris DSM 24302 = JCM 17472 [AYZR]
86170
86097
-
Glu
TTC
[ENA]
¡û
>W1610037695
AZGF01000026
Bacillota
Paucilactobacillus suebicus DSM 5007 = KCTC 3549 [AZGF]
33637
33565
-
Glu
TTC
[ENA]
¡û
>W1610037719
AZGF01000048
Bacillota
Paucilactobacillus suebicus DSM 5007 = KCTC 3549 [AZGF]
1515
1590
+
Glu
TTC
[ENA]
¡û
>W1610046707
BBCQ01000053
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [BBCQ]
17145
17070
-
Glu
TTC
[ENA]
¡û
>W121044023
AHZA01000158
Bacillota
Liquorilactobacillus vini JP7.8.9 [AHZA]
99
171
+
Glu
TTC
[ENA]
¡û
>W121044061
AHZA01000451
Bacillota
Liquorilactobacillus vini JP7.8.9 [AHZA]
1292
1364
+
Glu
TTC
[ENA]
¡û
>W1610958727
LVKD01000013
Bacillota
Ligilactobacillus aviarius [LVKD]
29234
29161
-
Glu
TTC
[ENA]
¡û
>W1610958739
LVKD01000033
Bacillota
Ligilactobacillus aviarius [LVKD]
401
474
+
Glu
TTC
[ENA]
¡û
>W1610958775
LVKD01000068
Bacillota
Ligilactobacillus aviarius [LVKD]
323
250
-
Glu
TTC
[ENA]
¡û
>W1610958835
LVKF01000010
Bacillota
Ligilactobacillus aviarius [LVKF]
44858
44785
-
Glu
TTC
[ENA]
¡û
>W1610958865
LVKF01000016
Bacillota
Ligilactobacillus aviarius [LVKF]
1525
1598
+
Glu
TTC
[ENA]
¡û
>W1610958878
LVKF01000034
Bacillota
Ligilactobacillus aviarius [LVKF]
25657
25584
-
Glu
TTC
[ENA]
¡û
>W1610958879
LVKF01000034
Bacillota
Ligilactobacillus aviarius [LVKF]
25551
25478
-
Glu
TTC
[ENA]
¡û
>W1610958905
LVKG01000026
Bacillota
Ligilactobacillus aviarius [LVKG]
27386
27313
-
Glu
TTC
[ENA]
¡û
>W1610958906
LVKG01000026
Bacillota
Ligilactobacillus aviarius [LVKG]
27280
27207
-
Glu
TTC
[ENA]
¡û
>W1610958925
LVKG01000027
Bacillota
Ligilactobacillus aviarius [LVKG]
1501
1574
+
Glu
TTC
[ENA]
¡û
>W1610958942
LVKG01000063
Bacillota
Ligilactobacillus aviarius [LVKG]
44858
44785
-
Glu
TTC
[ENA]
¡û
>W1610993665
LWUD01000010
Bacillota
Ligilactobacillus aviarius [LWUD]
226
299
+
Glu
TTC
[ENA]
¡û
>W1610993691
LWUD01000019
Bacillota
Ligilactobacillus aviarius [LWUD]
1628
1701
+
Glu
TTC
[ENA]
¡û
>W1610993697
LWUD01000020
Bacillota
Ligilactobacillus aviarius [LWUD]
415
488
+
Glu
TTC
[ENA]
¡û
>W1610993783
LWUF01000022
Bacillota
Ligilactobacillus aviarius [LWUF]
341
414
+
Glu
TTC
[ENA]
¡û
>W1610993803
LWUF01000027
Bacillota
Ligilactobacillus aviarius [LWUF]
571
498
-
Glu
TTC
[ENA]
¡û
>W1610993819
LWUF01000040
Bacillota
Ligilactobacillus aviarius [LWUF]
494
567
+
Glu
TTC
[ENA]
¡û
>W1630001097
AYZC01000095
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
265
192
-
Glu
TTC
[ENA]
¡û
>W1630001875
BBBU01000043
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
10481
10408
-
Glu
TTC
[ENA]
¡û
>W1710028810
AYZE01000010
Bacillota
Liquorilactobacillus cacaonum DSM 21116 [AYZE]
256
329
+
Glu
TTC
[ENA]
¡û
>W1710028842
AYZE01000015
Bacillota
Liquorilactobacillus cacaonum DSM 21116 [AYZE]
269834
269763
-
Glu
TTC
[ENA]
¡û
>W1710029289
AYZR01000007
Bacillota
Lentilactobacillus senioris DSM 24302 = JCM 17472 [AYZR]
86170
86097
-
Glu
TTC
[ENA]
¡û
>W1710034734
AZGF01000026
Bacillota
Paucilactobacillus suebicus DSM 5007 = KCTC 3549 [AZGF]
33637
33565
-
Glu
TTC
[ENA]
¡û
>W1710034758
AZGF01000048
Bacillota
Paucilactobacillus suebicus DSM 5007 = KCTC 3549 [AZGF]
1515
1590
+
Glu
TTC
[ENA]
¡û
>W1710058468
BCMF01000002
Bacillota
Secundilactobacillus mixtipabuli [BCMF]
297802
297729
-
Glu
TTC
[ENA]
¡û
>W1710058521
BCMF01000020
Bacillota
Secundilactobacillus mixtipabuli [BCMF]
488
412
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK