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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.375100 (25 seq.)
>W1711047373
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
155229
155155
-
Gln
TTG
[ENA]
¡û
>W1711047375
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
149892
149818
-
Gln
TTG
[ENA]
¡û
>W1711678541
MRUG01000083
Gammaproteobacteria
Alteromonadales bacterium BS08 [MRUG]
52639
52565
-
Gln
TTG
[ENA]
¡û
>C171097793
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
1111772
1111698
-
Gln
TTG
-
¡û
>C171097795
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
1106557
1106483
-
Gln
TTG
-
¡û
>C171103103
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
887909
887835
-
Gln
TTG
-
¡û
>W131175000
ARIX01000010
Gammaproteobacteria
Gilvimarinus chinensis DSM 19667 [ARIX]
30352
30278
-
Gln
TTG
[ENA]
¡û
>C020886
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
4154630
4154704
+
Gln
TTG
[Ensembl]
¡û
>WENV180102159
OAOX01070108
[OAOX] marine metagenome; l
79
5
-
Gln
TTG
[ENA]
¢þ
>W141425795
JELR01000002
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
196269
196343
+
Gln
TTG
[ENA]
¡û
>W141425797
JELR01000002
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
201673
201747
+
Gln
TTG
[ENA]
¡û
>WENV170647204
JQIA01015955
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
3369
3295
-
Gln
TTG
[ENA]
¢þ
>W09100553
AABI03000001
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
276893
276967
+
Gln
TTG
[ENA]
¡û
>W141777037
JOMR01000001
Gammaproteobacteria
Thiomicrospira pelophila DSM 1534 [JOMR]
1769008
1768934
-
Gln
TTG
[ENA]
¡û
>W1911138225
NOXC01000020
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
25584
25658
+
Gln
TTG
[ENA]
¡û
>C151016217
CP007030
Gammaproteobacteria
Thiomicrospira aerophila AL3 [CP007030]
1765975
1765901
-
Gln
TTG
[Ensembl]
¡û
>W1510865176
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
1450151
1450077
-
Gln
TTG
[ENA]
¡û
>C11122540
CP002776
Gammaproteobacteria
Thiomicrospira cyclica ALM1 [CP002776]
1563435
1563361
-
Gln
TTG
[Ensembl]
¡û
>W11170315
AFPJ01000030
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
74467
74541
+
Gln
TTG
[ENA]
¡û
>W11170317
AFPJ01000030
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
79660
79734
+
Gln
TTG
[ENA]
¡û
>W11178547
AGFA01000007
Gammaproteobacteria
Thiomicrospira aerophila AL3 [AGFA]
151890
151964
+
Gln
TTG
[ENA]
¡û
>W1610888502
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
155229
155155
-
Gln
TTG
[ENA]
¡û
>W1610888504
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
149892
149818
-
Gln
TTG
[ENA]
¡û
>W1710575168
FOYY01000003
Gammaproteobacteria
Thiomicrospira sp. ALE5 ALE5 [FOYY]
983918
983844
-
Gln
TTG
[ENA]
¡û
>W1710607821
FXAI01000010
Gammaproteobacteria
Alteromonadaceae bacterium Bs31 [FXAI]
68601
68675
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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