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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.375151 (54 seq.)
>C173000799
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
3937361
3937287
-
Thr
GGT
-
¡û
>C173001050
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
4641247
4641173
-
Thr
GGT
-
¡û
>WENV170690654
LFRM01354586
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10
84
+
Thr
GGT
[ENA]
¢þ
>C183002995
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
358119
358045
-
Thr
GGT
-
¡û
>C193002623
CP037867
Betaproteobacteria
Hydrogenophaga pseudoflava DSM 1084 [CP037867]
4512891
4512817
-
Thr
GGT
-
¡û
>C193002767
CP039252
Betaproteobacteria
Hydrogenophaga sp. PAMC20947 [CP039252]
3424292
3424218
-
Thr
GGT
-
¡û
>W1930012724
MERF01000250
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_61_14 [MERF]
4409
4483
+
Thr
GGT
[ENA]
¡û
>W1930012742
MERX01000596
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_66_10 [MERX]
304
230
-
Thr
GGT
[ENA]
¡û
>W1930020946
NERU01000010
Betaproteobacteria
Limnohabitans sp. WS1 [NERU]
422
348
-
Thr
GGT
[ENA]
¡û
>W1930020950
NERW01000001
Betaproteobacteria
Limnohabitans sp. T6-20 [NERW]
1078396
1078470
+
Thr
GGT
[ENA]
¡û
>W1930020952
NERX01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-192 [NERX]
469489
469563
+
Thr
GGT
[ENA]
¡û
>W1930020956
NESA01000009
Betaproteobacteria
Limnohabitans sp. JirII-31 [NESA]
144104
144178
+
Thr
GGT
[ENA]
¡û
>W1930020958
NESB01000004
Betaproteobacteria
Limnohabitans sp. JirII-29 [NESB]
199
125
-
Thr
GGT
[ENA]
¡û
>W1930020962
NESD01000003
Betaproteobacteria
Limnohabitans sp. Jir61 [NESD]
318616
318690
+
Thr
GGT
[ENA]
¡û
>W1930020964
NESF01000017
Betaproteobacteria
Limnohabitans sp. Hippo3 [NESF]
287
213
-
Thr
GGT
[ENA]
¡û
>W1930020965
NESG01000008
Betaproteobacteria
Limnohabitans sp. G3-2 [NESG]
287
213
-
Thr
GGT
[ENA]
¡û
>W1930020966
NESH01000006
Betaproteobacteria
Limnohabitans sp. Bal53 [NESH]
270688
270762
+
Thr
GGT
[ENA]
¡û
>W1930020967
NESI01000010
Betaproteobacteria
Limnohabitans sp. B9-3 [NESI]
143588
143662
+
Thr
GGT
[ENA]
¡û
>W1930020969
NESJ01000036
Betaproteobacteria
Limnohabitans sp. 2KL-51 [NESJ]
11139
11213
+
Thr
GGT
[ENA]
¡û
>W1930020972
NESL01000018
Betaproteobacteria
Limnohabitans sp. 2KL-1 [NESL]
391
317
-
Thr
GGT
[ENA]
¡û
>W1930020975
NESM01000005
Betaproteobacteria
Limnohabitans sp. 15K [NESM]
149715
149789
+
Thr
GGT
[ENA]
¡û
>W1930020978
NESP01000001
Betaproteobacteria
Limnohabitans curvus MWH-C5 [NESP]
1251557
1251483
-
Thr
GGT
[ENA]
¡û
>W1830006064
PTQX01000003
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
438937
439011
+
Thr
GGT
[ENA]
¡û
>W1830006065
PTQX01000013
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
154758
154832
+
Thr
GGT
[ENA]
¡û
>W1830014549
QQAV01000001
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
1427085
1427159
+
Thr
GGT
[ENA]
¡û
>C153001257
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
1412158
1412084
-
Thr
GGT
-
¡û
>C11300451
CP000245
Betaproteobacteria
Ramlibacter tataouinensis TTB310 [CP000245]
3818650
3818576
-
Thr
GGT
[Ensembl]
¡û
>C163000458
CP011774
Betaproteobacteria
Limnohabitans sp. 63ED37-2 [CP011774]
3245524
3245598
+
Thr
GGT
[Ensembl]
¡û
>W123002651
ALKO01000008
Betaproteobacteria
Limnohabitans sp. Rim47 [ALKO]
114629
114703
+
Thr
GGT
[ENA]
¡û
>W1630003319
BCTF01000015
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
148382
148456
+
Thr
GGT
[ENA]
¡û
>W1630003405
BCWQ01000010
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
119
45
-
Thr
GGT
[ENA]
¡û
>W1630003407
BCWR01000019
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
214811
214885
+
Thr
GGT
[ENA]
¡û
>W1630004564
FBYA01000006
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
309
235
-
Thr
GGT
[ENA]
¡û
>W1630010065
LDSL01000037
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
301
227
-
Thr
GGT
[ENA]
¡û
>W1630013289
LMIE01000001
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
1364
1290
-
Thr
GGT
[ENA]
¡û
>W1630013512
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
215
141
-
Thr
GGT
[ENA]
¡û
>W1630019469
LVWD01000042
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
154
80
-
Thr
GGT
[ENA]
¡û
>W1730002557
BCTF01000015
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
148382
148456
+
Thr
GGT
[ENA]
¡û
>W1730002638
BCWQ01000010
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
119
45
-
Thr
GGT
[ENA]
¡û
>W1730002640
BCWR01000019
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
214811
214885
+
Thr
GGT
[ENA]
¡û
>W1730003851
FBYA01000006
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
309
235
-
Thr
GGT
[ENA]
¡û
>W1730010253
FQUZ01000030
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
1342
1268
-
Thr
GGT
[ENA]
¡û
>W1730012239
LDSL01000037
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
301
227
-
Thr
GGT
[ENA]
¡û
>W1730015711
LMIE01000001
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
1364
1290
-
Thr
GGT
[ENA]
¡û
>W1730015934
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
215
141
-
Thr
GGT
[ENA]
¡û
>W1730022710
LVWD01000042
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
154
80
-
Thr
GGT
[ENA]
¡û
>W1730026055
MCIC01000020
Betaproteobacteria
Hydrogenophaga sp. H7 [MCIC]
197032
197106
+
Thr
GGT
[ENA]
¡û
>W1730026733
MEFU01000023
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
62115
62189
+
Thr
GGT
[ENA]
¡û
>W1730026959
MERT01000026
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
209
135
-
Thr
GGT
[ENA]
¡û
>W1730035133
MUNZ01000075
Betaproteobacteria
Hydrogenophaga sp. A37 [MUNZ]
240
166
-
Thr
GGT
[ENA]
¡û
>W1730040780
NFUU01000003
Betaproteobacteria
Hydrogenophaga sp. IBVHS1 [NFUU]
608
534
-
Thr
GGT
[ENA]
¡û
>W133001494
ANOY01001352
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
221
147
-
Thr
GGT
[ENA]
¡û
>W133004675
AUET01000010
Betaproteobacteria
Comamonadaceae bacterium URHA0028 [AUET]
1020
946
-
Thr
GGT
[ENA]
¡û
>W133004752
AUGX01000056
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
24508
24582
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK