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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37525 (39 seq.)
>W131051980
AMYG01000042
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
26893
26981
+
Leu
CAA
[ENA]
¡û
>W131167563
ARDJ01000013
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
59885
59797
-
Leu
CAA
[ENA]
¡û
>w018985
AATV01000030
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
15737
15825
+
Leu
CAA
[ENA]
¡û
>w010195
AAKQ01000023
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
17258
17346
+
Leu
CAA
[ENA]
¡û
>W141092588
AVAF01000093
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
106735
106823
+
Leu
CAA
[ENA]
¡û
>WENV181226202
OFDK01000201
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
14566
14654
+
Leu
CAA
[ENA]
¢þ
>WENV181226270
OFDK01000486
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
3859
3947
+
Leu
CAA
[ENA]
¢þ
>C08010979
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1476362
1476277
-
Leu
CAA
[Ensembl]
¡û
>C08011080
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1066494
1066409
-
Leu
CAA
[Ensembl]
¡û
>W141276489
JADV01000018
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
31268
31356
+
Leu
CAA
[ENA]
¡û
>WENV170675652
LDZP01000180
[LDZP] terrestrial metagenome; oil reservoir sample I1
34660
34572
-
Leu
CAA
[ENA]
¢þ
>WENV170676514
LDZS01000512
[LDZS] terrestrial metagenome; oil reservoir sample K3
4150
4062
-
Leu
CAA
[ENA]
¢þ
>C191108141
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1697104
1697016
-
Leu
CAA
-
¡û
>W09133555
ACPF01000087
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
699
787
+
Leu
CAA
[ENA]
¡û
>W09134139
ACQZ01000019
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
37397
37485
+
Leu
CAA
[ENA]
¡û
>W09135056
ACVH01000025
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
31215
31303
+
Leu
CAA
[ENA]
¡û
>W09135159
ACVK01000028
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
14756
14668
-
Leu
CAA
[ENA]
¡û
>W09135849
ACXP01000010
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
2149
2061
-
Leu
CAA
[ENA]
¡û
>W1910665471
MCIB01000007
Bacillota
Thermohalobacter berrensis CTT3 [MCIB]
21854
21766
-
Leu
CAA
[ENA]
¡û
>W10105963
ACXY01000046
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
699
787
+
Leu
CAA
[ENA]
¡û
>W10120522
ADXD01000112
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
511
599
+
Leu
CAA
[ENA]
¡û
>C10113416
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1051038
1050950
-
Leu
CAA
[Ensembl]
¡û
>C10113475
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1079409
1079321
-
Leu
CAA
[Ensembl]
¡û
>W11108286
ACXY01000046
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
699
787
+
Leu
CAA
[ENA]
¡û
>W1511275097
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
340879
340791
-
Leu
CAA
[ENA]
¡û
>C11122507
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1058685
1058597
-
Leu
CAA
[Ensembl]
¡û
>C11122716
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1438021
1438109
+
Leu
CAA
[Ensembl]
¡û
>C11123270
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1170137
1170049
-
Leu
CAA
[Ensembl]
¡û
>W11127131
ADXD01000112
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
511
599
+
Leu
CAA
[ENA]
¡û
>W11152644
AEYS01000008
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
1416
1328
-
Leu
CAA
[ENA]
¡û
>W1610043669
BAZY01000022
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
17711
17799
+
Leu
CAA
[ENA]
¡û
>W121068126
AJUD01000020
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
294364
294452
+
Leu
CAA
[ENA]
¡û
>W1610612284
LGEO01000017
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
34660
34572
-
Leu
CAA
[ENA]
¡û
>W1710040829
BAZY01000022
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
17711
17799
+
Leu
CAA
[ENA]
¡û
>W1710515297
FNBS01000001
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
575
487
-
Leu
CAA
[ENA]
¡û
>W1710560382
FONI01000036
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
24380
24292
-
Leu
CAA
[ENA]
¡û
>W1710583325
FQUR01000019
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
7944
8032
+
Leu
CAA
[ENA]
¡û
>W1710584072
FQVH01000004
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
68177
68089
-
Leu
CAA
[ENA]
¡û
>W1710733790
LGEO01000017
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
34660
34572
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK