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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376260 (128 seq.)
>W1710929615
LOGK01000125
Gammaproteobacteria
Escherichia coli [LOGK]
35943
36018
+
Met
CAT
[ENA]
¡û
>W1711230633
LYAF01000082
Gammaproteobacteria
Escherichia coli [LYAF]
32108
32183
+
Met
CAT
[ENA]
¡û
>W1711231427
LYAR01000058
Gammaproteobacteria
Escherichia coli [LYAR]
367
292
-
Met
CAT
[ENA]
¡û
>W1711234198
LYCG01000326
Gammaproteobacteria
Escherichia coli [LYCG]
164117
164192
+
Met
CAT
[ENA]
¡û
>W1711602099
MOKZ01000005
Gammaproteobacteria
Escherichia coli [MOKZ]
583
508
-
Met
CAT
[ENA]
¡û
>W131048279
AMUQ01000148
Gammaproteobacteria
Escherichia coli N1 [AMUQ]
5012
4937
-
Met
CAT
[ENA]
¡û
>W131072158
ANTH01000022
Gammaproteobacteria
Escherichia coli KTE193 [ANTH]
19539
19464
-
Met
CAT
[ENA]
¡û
>W131078832
ANWY01000033
Gammaproteobacteria
Escherichia coli KTE196 [ANWY]
47181
47106
-
Met
CAT
[ENA]
¡û
>W1712083049
NHQD01000002
Gammaproteobacteria
Escherichia coli [NHQD]
5801
5726
-
Met
CAT
[ENA]
¡û
>W1712083437
NHQI01000002
Gammaproteobacteria
Escherichia coli [NHQI]
5801
5726
-
Met
CAT
[ENA]
¡û
>C171124096
CP021840
Gammaproteobacteria
Escherichia coli EC974 [CP021840]
210341
210266
-
Met
CAT
-
¡û
>C171124110
CP021844
Gammaproteobacteria
Escherichia coli EC1515 [CP021844]
1227349
1227424
+
Met
CAT
-
¡û
>WENV180221510
OBAZ01013338
[OBAZ] human gut metagenome; human gut
449
374
-
Ile2
CAT
[ENA]
¢þ
>WENV180231293
OBCN01007527
[OBCN] human gut metagenome; human gut
283
208
-
Ile2
CAT
[ENA]
¢þ
>WENV180468342
OBYJ01006596
[OBYJ] human gut metagenome; faeces
544
469
-
Ile2
CAT
[ENA]
¢þ
>W141134065
AWDV01000021
Gammaproteobacteria
Escherichia coli UMEA 3671-1 [AWDV]
35343
35268
-
Met
CAT
[ENA]
¡û
>WENV181470210
OGEU01001870
[OGEU] metagenome; Human gut stool
7906
7831
-
Ile2
CAT
[ENA]
¢þ
>W141183326
AYIO01000011
Gammaproteobacteria
Escherichia coli BWH 32 [AYIO]
33588
33513
-
Met
CAT
[ENA]
¡û
>WENV181884606
OGXJ01000865
[OGXJ] human gut metagenome; faeces
15975
16050
+
Ile2
CAT
[ENA]
¢þ
>W141192252
AYQM01000052
Gammaproteobacteria
Escherichia coli 320 [AYQM]
31945
32020
+
Met
CAT
[ENA]
¡û
>WENV181980447
OHAF01033300
[OHAF] human gut metagenome; faeces
1135
1060
-
Ile2
CAT
[ENA]
¢þ
>WENV181989574
OHAO01017403
[OHAO] human gut metagenome; faeces
1842
1767
-
Ile2
CAT
[ENA]
¢þ
>WENV182164126
OHML01001594
[OHML] human gut metagenome; feces
68
143
+
Ile2
CAT
[ENA]
¢þ
>WENV182230090
OHRK01000288
[OHRK] human gut metagenome; feces
1866
1791
-
Ile2
CAT
[ENA]
¢þ
>WENV182612244
OJJY01000154
[OJJY] metagenome; faeces
29460
29385
-
Ile2
CAT
[ENA]
¢þ
>W141262713
CCCO010000045
Gammaproteobacteria
Escherichia coli D6-113.11 [CCCO]
668927
669002
+
Met
CAT
[ENA]
¡û
>WENV182831475
OKEE01003544
[OKEE] human gut metagenome; human gut
624
699
+
Ile2
CAT
[ENA]
¢þ
>WENV182833041
OKEQ01003155
[OKEQ] human gut metagenome; human gut
697
622
-
Ile2
CAT
[ENA]
¢þ
>WENV183533046
OOAD01056768
[OOAD] human gut metagenome; human gut
46
121
+
Ile2
CAT
[ENA]
¢þ
>C181097661
CP024223
Gammaproteobacteria
Escherichia coli O169:H41 2014EL-1345-2 [CP024223]
1079501
1079426
-
Met
CAT
-
¡û
>C181098792
CP024273
Gammaproteobacteria
Escherichia coli F9792 [CP024273]
2825300
2825225
-
Met
CAT
-
¡û
>C191082766
CP031919
Gammaproteobacteria
Escherichia coli O145:NM FWSEC0002 [CP031919]
1243565
1243640
+
Met
CAT
-
¡û
>C191091318
CP032523
Gammaproteobacteria
Shigella sonnei AR_0030 [CP032523]
249226
249151
-
Met
CAT
-
¡û
>W141533676
JHFN01000002
Gammaproteobacteria
Escherichia coli O145:NM str. 2010C-3526 [JHFN]
250096
250171
+
Met
CAT
[ENA]
¡û
>W141533897
JHFP01000100
Gammaproteobacteria
Escherichia coli O145:NM str. 2010C-3518 [JHFP]
250596
250671
+
Met
CAT
[ENA]
¡û
>C191193718
LR133909
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Daytona NCTC7102 [LR133909]
659782
659706
-
Met
CAT
-
¡û
>C191194576
LR134079
Gammaproteobacteria
Escherichia coli NCTC9112 [LR134079]
1274431
1274506
+
Met
CAT
-
¡û
>C191194757
LR134081
Gammaproteobacteria
Escherichia coli NCTC9033 [LR134081]
1326863
1326938
+
Met
CAT
-
¡û
>C191195474
LR134092
Gammaproteobacteria
Escherichia coli NCTC10444 [LR134092]
1260620
1260695
+
Met
CAT
-
¡û
>C191202452
LR134246
Gammaproteobacteria
Escherichia coli NCTC9702 [LR134246]
1301676
1301751
+
Met
CAT
-
¡û
>W141550542
JHNN01000034
Gammaproteobacteria
Escherichia coli O145:NM str. 06-3484 [JHNN]
7322
7247
-
Met
CAT
[ENA]
¡û
>W1910075773
BFJX01000009
Gammaproteobacteria
Escherichia coli HH-NP013 [BFJX]
689382
689457
+
Met
CAT
[ENA]
¡û
>W1910084478
BFOL01000002
Gammaproteobacteria
Escherichia coli JML070 [BFOL]
64184
64109
-
Met
CAT
[ENA]
¡û
>W1910101646
BFXQ01000017
Gammaproteobacteria
Escherichia coli KK-P045 [BFXQ]
32825
32750
-
Met
CAT
[ENA]
¡û
>W1910123533
BGIL01000054
Gammaproteobacteria
Escherichia coli SI-P025 [BGIL]
358294
358369
+
Met
CAT
[ENA]
¡û
>W1910125179
BGJF01000077
Gammaproteobacteria
Escherichia coli SI-P077 [BGJF]
96812
96887
+
Met
CAT
[ENA]
¡û
>W1910537159
FZGX01000007
Gammaproteobacteria
Escherichia coli [FZGX]
5478
5403
-
Met
CAT
[ENA]
¡û
>W1910588535
JZMO01000003
Gammaproteobacteria
Escherichia coli HT2012EP02 [JZMO]
32370
32295
-
Met
CAT
[ENA]
¡û
>W1910592344
JZOS01000035
Gammaproteobacteria
Escherichia coli HT2012024 [JZOS]
19762
19687
-
Met
CAT
[ENA]
¡û
>W1910593470
JZPI01000103
Gammaproteobacteria
Escherichia coli HT2012191 [JZPI]
37963
38038
+
Met
CAT
[ENA]
¡û
>W1910805743
MTWY01000039
Gammaproteobacteria
Escherichia coli 1276-1 [MTWY]
205862
205937
+
Met
CAT
[ENA]
¡û
>W1910816245
MVPO01000017
Gammaproteobacteria
Escherichia coli GMR-RB-634 [MVPO]
32577
32502
-
Met
CAT
[ENA]
¡û
>W1910854578
NBKQ01000067
Gammaproteobacteria
Escherichia coli Aut2013_WWKa_OUT_3 [NBKQ]
8228
8303
+
Met
CAT
[ENA]
¡û
>W1910957131
NJSY01000035
Gammaproteobacteria
Escherichia coli MOD1-EC2400 [NJSY]
36048
36123
+
Met
CAT
[ENA]
¡û
>W1910957442
NJTC01000040
Gammaproteobacteria
Escherichia coli MOD1-EC1990 [NJTC]
36328
36403
+
Met
CAT
[ENA]
¡û
>W1910966129
NJXM01000032
Gammaproteobacteria
Escherichia coli MOD1-EC2310 [NJXM]
36467
36542
+
Met
CAT
[ENA]
¡û
>W1910967232
NJYA01000037
Gammaproteobacteria
Escherichia coli MOD1-EC1969 [NJYA]
36328
36403
+
Met
CAT
[ENA]
¡û
>W1910967456
NJYD01000032
Gammaproteobacteria
Escherichia coli MOD1-EC1954 [NJYD]
14369
14294
-
Met
CAT
[ENA]
¡û
>W1910969673
NJZG01000037
Gammaproteobacteria
Escherichia coli MOD1-EC1641 [NJZG]
36328
36403
+
Met
CAT
[ENA]
¡û
>W1910983072
NKMX01000036
Gammaproteobacteria
Escherichia coli MOD1-EC2314 [NKMX]
36328
36403
+
Met
CAT
[ENA]
¡û
>W1910983153
NKMY01000041
Gammaproteobacteria
Escherichia coli MOD1-EC2311 [NKMY]
36328
36403
+
Met
CAT
[ENA]
¡û
>W1910983251
NKMZ01000126
Gammaproteobacteria
Escherichia coli MOD1-EC2308 [NKMZ]
285
360
+
Met
CAT
[ENA]
¡û
>W1910984268
NKNM01000084
Gammaproteobacteria
Escherichia coli MOD1-EC1935 [NKNM]
7009
6934
-
Met
CAT
[ENA]
¡û
>W1911005749
NLGR01000050
Gammaproteobacteria
Escherichia coli MOD1-EC5723 [NLGR]
4038
3963
-
Met
CAT
[ENA]
¡û
>W1911012355
NLJW01000066
Gammaproteobacteria
Escherichia coli MOD1-EC5635 [NLJW]
210
135
-
Met
CAT
[ENA]
¡û
>W1911012424
NLJX01000036
Gammaproteobacteria
Escherichia coli MOD1-EC5634 [NLJX]
14105
14030
-
Met
CAT
[ENA]
¡û
>W1911012962
NLKD01000193
Gammaproteobacteria
Escherichia coli MOD1-EC5628 [NLKD]
130
205
+
Met
CAT
[ENA]
¡û
>W1911013668
NLKN01000015
Gammaproteobacteria
Escherichia coli MOD1-EC5586 [NLKN]
32382
32457
+
Met
CAT
[ENA]
¡û
>W1911014353
NLKX01000004
Gammaproteobacteria
Escherichia coli MOD1-EC5576 [NLKX]
163792
163867
+
Met
CAT
[ENA]
¡û
>W1911014552
NLLA01000005
Gammaproteobacteria
Escherichia coli MOD1-EC5573 [NLLA]
14051
13976
-
Met
CAT
[ENA]
¡û
>W1911014991
NLLG01000057
Gammaproteobacteria
Escherichia coli MOD1-EC5567 [NLLG]
1137
1062
-
Met
CAT
[ENA]
¡û
>W1911016107
NLLW01000022
Gammaproteobacteria
Escherichia coli MOD1-EC5549 [NLLW]
32287
32212
-
Met
CAT
[ENA]
¡û
>W1911016181
NLLX01000090
Gammaproteobacteria
Escherichia coli MOD1-EC5548 [NLLX]
2829
2904
+
Met
CAT
[ENA]
¡û
>W1911020288
NLOH01000031
Gammaproteobacteria
Escherichia coli MOD1-EC5481 [NLOH]
18379
18304
-
Met
CAT
[ENA]
¡û
>W1911026496
NLSC01000030
Gammaproteobacteria
Escherichia coli MOD1-EC5112 [NLSC]
5375
5300
-
Met
CAT
[ENA]
¡û
>W1911029859
NLTZ01000026
Gammaproteobacteria
Escherichia coli MOD1-EC5051 [NLTZ]
19681
19606
-
Met
CAT
[ENA]
¡û
>W1911035203
NLWU01000076
Gammaproteobacteria
Escherichia coli MOD1-EC6493 [NLWU]
32454
32379
-
Met
CAT
[ENA]
¡û
>W1911035719
NLXB01000011
Gammaproteobacteria
Escherichia coli MOD1-EC6483 [NLXB]
63430
63355
-
Met
CAT
[ENA]
¡û
>W1911040812
NLZQ01000023
Gammaproteobacteria
Escherichia coli MOD1-EC6329 [NLZQ]
34041
34116
+
Met
CAT
[ENA]
¡û
>W1911057122
NMIF01000031
Gammaproteobacteria
Escherichia coli MOD1-EC6384 [NMIF]
31044
31119
+
Met
CAT
[ENA]
¡û
>W1911064353
NMLV01000013
Gammaproteobacteria
Escherichia coli MOD1-EC6602 [NMLV]
100281
100356
+
Met
CAT
[ENA]
¡û
>W1911067819
NMNN01000004
Gammaproteobacteria
Escherichia coli MOD1-EC6917 [NMNN]
7347
7272
-
Met
CAT
[ENA]
¡û
>W1911090181
NNVE01000017
Gammaproteobacteria
Escherichia coli MOD1-EC6575 [NNVE]
44781
44706
-
Met
CAT
[ENA]
¡û
>W1911094787
NNXP01000021
Gammaproteobacteria
Escherichia coli MOD1-EC6272 [NNXP]
59934
59859
-
Met
CAT
[ENA]
¡û
>W1911099747
NOAG01000064
Gammaproteobacteria
Escherichia coli MOD1-EC5865 [NOAG]
255
330
+
Met
CAT
[ENA]
¡û
>W1911102699
NOBW01000022
Gammaproteobacteria
Escherichia coli MOD1-EC5818 [NOBW]
39623
39548
-
Met
CAT
[ENA]
¡û
>W1911106217
NODT01000002
Gammaproteobacteria
Escherichia coli MOD1-EC5640 [NODT]
682902
682977
+
Met
CAT
[ENA]
¡û
>W1911106685
NODZ01000029
Gammaproteobacteria
Escherichia coli MOD1-EC5391 [NODZ]
34184
34259
+
Met
CAT
[ENA]
¡û
>W1911107809
NOEP01000022
Gammaproteobacteria
Escherichia coli MOD1-EC5313 [NOEP]
56349
56274
-
Met
CAT
[ENA]
¡û
>W1911108845
NOFE01000026
Gammaproteobacteria
Escherichia coli MOD1-EC5205 [NOFE]
32307
32382
+
Met
CAT
[ENA]
¡û
>W1911167290
NQBW01000048
Gammaproteobacteria
Escherichia coli ECSW+07 [NQBW]
16474
16399
-
Met
CAT
[ENA]
¡û
>W1911219971
NRTB01000028
Gammaproteobacteria
Escherichia coli A295 [NRTB]
19347
19272
-
Met
CAT
[ENA]
¡û
>W1911220375
NRTG01000071
Gammaproteobacteria
Escherichia coli A334 [NRTG]
1643
1568
-
Met
CAT
[ENA]
¡û
>W1911229077
NRXU01000120
Gammaproteobacteria
Escherichia coli A287 [NRXU]
74600
74675
+
Met
CAT
[ENA]
¡û
>W1911229344
NRXY01000038
Gammaproteobacteria
Escherichia coli A349-1 [NRXY]
22744
22669
-
Met
CAT
[ENA]
¡û
>W1911241130
NSEQ01000049
Gammaproteobacteria
Escherichia coli JEONG-5766 [NSEQ]
117348
117423
+
Met
CAT
[ENA]
¡û
>W1911277337
NTEX01000060
Gammaproteobacteria
Escherichia coli KCJK5142 [NTEX]
297
372
+
Met
CAT
[ENA]
¡û
>W1911408631
NWSE01000009
Gammaproteobacteria
Escherichia coli OLC0719 [NWSE]
120349
120424
+
Met
CAT
[ENA]
¡û
>W1911766434
QXDN01000158
Gammaproteobacteria
Escherichia coli PS00209 [QXDN]
1956
2031
+
Met
CAT
[ENA]
¡û
>W1810029867
BGVP01000003
Gammaproteobacteria
Escherichia coli TUM18684 [BGVP]
32568
32493
-
Met
CAT
[ENA]
¡û
>W1810098160
PGKP01000002
Gammaproteobacteria
Escherichia coli CF10 [PGKP]
39673
39598
-
Met
CAT
[ENA]
¡û
>W1810146716
PIOZ01000091
Gammaproteobacteria
Escherichia coli KCJK6388 [PIOZ]
39659
39584
-
Met
CAT
[ENA]
¡û
>W1810162850
PJFU01000007
Gammaproteobacteria
Escherichia coli 3150 [PJFU]
823
748
-
Met
CAT
[ENA]
¡û
>W1810726413
QODW01000027
Gammaproteobacteria
Escherichia coli AVC64 [QODW]
32339
32264
-
Met
CAT
[ENA]
¡û
>W1810727942
QOEP01000040
Gammaproteobacteria
Escherichia coli AVC246 [QOEP]
19049
19124
+
Met
CAT
[ENA]
¡û
>W1810728306
QOEU01000002
Gammaproteobacteria
Escherichia coli AVC233 [QOEU]
32339
32264
-
Met
CAT
[ENA]
¡û
>W1810728740
QOEZ01000010
Gammaproteobacteria
Escherichia coli AVC224 [QOEZ]
32339
32264
-
Met
CAT
[ENA]
¡û
>W1810729201
QOFF01000001
Gammaproteobacteria
Escherichia coli AVC219 [QOFF]
70143
70068
-
Met
CAT
[ENA]
¡û
>W1810729613
QOFK01000015
Gammaproteobacteria
Escherichia coli AVC210 [QOFK]
244
319
+
Met
CAT
[ENA]
¡û
>W1810730345
QOFT01000012
Gammaproteobacteria
Escherichia coli AVC197 [QOFT]
32339
32264
-
Met
CAT
[ENA]
¡û
>W1810730683
QOFX01000023
Gammaproteobacteria
Escherichia coli AVC186 [QOFX]
32319
32394
+
Met
CAT
[ENA]
¡û
>W1810731731
QOGK01000022
Gammaproteobacteria
Escherichia coli AVC149 [QOGK]
32339
32264
-
Met
CAT
[ENA]
¡û
>W1810742491
QOOM01000061
Gammaproteobacteria
Escherichia coli SC313 [QOOM]
164120
164195
+
Met
CAT
[ENA]
¡û
>C151008711
CP006027
Gammaproteobacteria
Escherichia coli O145:H28 str. RM13514 [CP006027]
3403748
3403673
-
Met
CAT
[Ensembl]
¡û
>C151008983
CP006262
Gammaproteobacteria
Escherichia coli O145:H28 str. RM13516 [CP006262]
3331214
3331139
-
Met
CAT
[Ensembl]
¡û
>W10105484
ACXG01000044
Gammaproteobacteria
Escherichia coli B354 [ACXG]
7474
7399
-
Met
CAT
[ENA]
¡û
>W11107804
ACXG01000044
Gammaproteobacteria
Escherichia coli B354 [ACXG]
7474
7399
-
Met
CAT
[ENA]
¡û
>W1510711499
CXJZ01000287
Gammaproteobacteria
Shigella sonnei 98284 [CXJZ]
2424
2349
-
Met
CAT
[ENA]
¡û
>W1511042159
JHSQ01000020
Gammaproteobacteria
Escherichia coli 100100 [JHSQ]
37136
37061
-
Met
CAT
[ENA]
¡û
>W1511515344
JXVT01000006
Gammaproteobacteria
Escherichia coli OLC-675 [JXVT]
166497
166572
+
Met
CAT
[ENA]
¡û
>W1511630271
LDCU01000040
Gammaproteobacteria
Escherichia coli CFSAN026805 [LDCU]
99774
99849
+
Met
CAT
[ENA]
¡û
>W1511693067
LFZJ01000005
Gammaproteobacteria
Escherichia coli IH57218 [LFZJ]
1357219
1357294
+
Met
CAT
[ENA]
¡û
>W1610595408
LEAC01000023
Gammaproteobacteria
Escherichia coli [LEAC]
8043
7968
-
Met
CAT
[ENA]
¡û
>W1610787157
LOGK01000125
Gammaproteobacteria
Escherichia coli [LOGK]
35943
36018
+
Met
CAT
[ENA]
¡û
>W1710083859
BDLI01000002
Gammaproteobacteria
Escherichia coli [BDLI]
7321
7246
-
Met
CAT
[ENA]
¡û
>W1710084086
BDLL01000015
Gammaproteobacteria
Escherichia coli [BDLL]
7321
7246
-
Met
CAT
[ENA]
¡û
>W1710084141
BDLM01000003
Gammaproteobacteria
Escherichia coli [BDLM]
53339
53264
-
Met
CAT
[ENA]
¡û
>W1710714860
LEAC01000023
Gammaproteobacteria
Escherichia coli [LEAC]
8043
7968
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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