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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376669 (8 seq.)
>W1610636424
LIUG01000194
Fibrobacterota
Candidatus Fibromonas termitidis [LIUG]
1535
1607
+
Thr
CGT
[ENA]
¡û
>W1610636434
LIUH01000021
Fibrobacterota
Fibrobacteria bacterium GUT31 [LIUH]
14922
14994
+
Thr
CGT
[ENA]
¡û
>W1610636491
LIUI01000091
Fibrobacterota
Fibrobacteria bacterium GUT307 [LIUI]
1483
1555
+
Thr
CGT
[ENA]
¡û
>WENV080492
ABDH01023193
Gut microbiome of termites
382
457
+
Thr
CGT
[ENA]
>WENV080536
ABDH01029647
Gut microbiome of termites
580
657
+
Thr
CGT
[ENA]
>W1710771197
LIUG01000194
Fibrobacterota
Candidatus Fibromonas termitidis [LIUG]
1535
1607
+
Thr
CGT
[ENA]
¡û
>W1710771207
LIUH01000021
Fibrobacterota
Fibrobacteria bacterium GUT31 [LIUH]
14922
14994
+
Thr
CGT
[ENA]
¡û
>W1710771264
LIUI01000091
Fibrobacterota
Fibrobacteria bacterium GUT307 [LIUI]
1483
1555
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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