This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376983 (73 seq.)
>W1710909062
LNQD01000052
Bacillota
Lacticaseibacillus paracasei casei [LNQD]
57235
57163
-
Ala
GGC
[ENA]
¡û
>W1710979325
LPNW01000064
Bacillota
Lacticaseibacillus rhamnosus [LPNW]
105111
105183
+
Ala
GGC
[ENA]
¡û
>W1711097178
LTIK01000131
Bacillota
Lactobacillus sp. HMSC078F07 [LTIK]
26894
26822
-
Ala
GGC
[ENA]
¡û
>W1711097834
LTJB01000011
Bacillota
Lactobacillus sp. HMSC064F12 [LTJB]
26771
26699
-
Ala
GGC
[ENA]
¡û
>W1711109884
LTVA01000163
Bacillota
Lactobacillus sp. HMSC075D02 [LTVA]
14517
14589
+
Ala
GGC
[ENA]
¡û
>W1711187426
LWPM01000007
Bacillota
Lactobacillus sp. HMSC25A02 [LWPM]
33261
33189
-
Ala
GGC
[ENA]
¡û
>W1711487445
MKGA01000001
Bacillota
Lacticaseibacillus paracasei [MKGA]
62285
62357
+
Ala
GGC
[ENA]
¡û
>W1711961636
NCSP01000006
Bacillota
Lacticaseibacillus paracasei [NCSP]
220173
220101
-
Ala
GGC
[ENA]
¡û
>C171030556
CP014201
Bacillota
Lacticaseibacillus rhamnosus BFE5264 [CP014201]
2913662
2913590
-
Ala
GGC
-
¡û
>W131062709
ANKA01000069
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp228 [ANKA]
833
905
+
Ala
GGC
[ENA]
¡û
>W131063133
ANKL01000255
Bacillota
Lacticaseibacillus paracasei subsp. paracasei CNCM I-4648 [ANKL]
1017
1089
+
Ala
GGC
[ENA]
¡û
>W131063730
ANLF01000114
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp70 [ANLF]
6512
6440
-
Ala
GGC
[ENA]
¡û
>W131064857
ANML01000014
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp223 [ANML]
101650
101722
+
Ala
GGC
[ENA]
¡û
>W131064950
ANMN01000005
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp226 [ANMN]
100539
100611
+
Ala
GGC
[ENA]
¡û
>W141004314
AFYJ01000006
Bacillota
Lacticaseibacillus casei 12A [AFYJ]
68678
68606
-
Ala
GGC
[ENA]
¡û
>W141004478
AFYM01000020
Bacillota
Lacticaseibacillus casei A2-362 [AFYM]
129900
129828
-
Ala
GGC
[ENA]
¡û
>W141004864
AFYT01000011
Bacillota
Lacticaseibacillus paracasei Lc-10 [AFYT]
137745
137673
-
Ala
GGC
[ENA]
¡û
>WENV180137377
OATO01013759
[OATO] human gut metagenome; faeces
279
351
+
Ala
GGC
[ENA]
¢þ
>WENV180184009
OAWR01000193
[OAWR] human gut metagenome; faeces
9384
9456
+
Ala
GGC
[ENA]
¢þ
>WENV180442466
OBWX01000022
[OBWX] human gut metagenome; faeces
60676
60604
-
Ala
GGC
[ENA]
¢þ
>WENV180444267
OBWZ01000431
[OBWZ] human gut metagenome; faeces
6835
6907
+
Ala
GGC
[ENA]
¢þ
>WENV180467864
OBYJ01000063
[OBYJ] human gut metagenome; faeces
68715
68643
-
Ala
GGC
[ENA]
¢þ
>WENV180481935
OBZF01020926
[OBZF] human gut metagenome; faeces
160
88
-
Ala
GGC
[ENA]
¢þ
>W141047276
AMQW01000001
Bacillota
Lacticaseibacillus rhamnosus LRHMDP2 [AMQW]
379254
379182
-
Ala
GGC
[ENA]
¡û
>W08010403
ABQV01000057
Bacillota
Lacticaseibacillus paracasei subsp. paracasei 8700:2 [ABQV]
68325
68253
-
Ala
GGC
[ENA]
¡û
>WENV182804434
OJUV01000010
[OJUV] human gut metagenome; human gut
89300
89372
+
Ala
GGC
[ENA]
¢þ
>WENV182830441
OKDZ01000011
[OKDZ] human gut metagenome; human gut
2159
2087
-
Ala
GGC
[ENA]
¢þ
>WENV182831652
OKEG01000084
[OKEG] human gut metagenome; human gut
28709
28781
+
Ala
GGC
[ENA]
¢þ
>WENV182832006
OKEJ01000032
[OKEJ] human gut metagenome; human gut
69630
69702
+
Ala
GGC
[ENA]
¢þ
>WENV182855118
OKMY01000062
[OKMY] human gut metagenome; human gut
43673
43601
-
Ala
GGC
[ENA]
¢þ
>WENV182861362
OKPE01000502
[OKPE] human gut metagenome; human gut
932
1004
+
Ala
GGC
[ENA]
¢þ
>WENV182941508
OKVG01002271
[OKVG] human gut metagenome; human gut
6421
6349
-
Ala
GGC
[ENA]
¢þ
>WENV182941661
OKVG01004993
[OKVG] human gut metagenome; human gut
2771
2843
+
Ala
GGC
[ENA]
¢þ
>WENV183149754
OLOO01019566
[OLOO] human gut metagenome; faeces
1066
1138
+
Ala
GGC
[ENA]
¢þ
>C08005916
FM177140
Bacillota
Lacticaseibacillus paracasei BL23 [FM177140]
784571
784499
-
Ala
GGC
[Ensembl]
¡û
>C181119651
CP025582
Bacillota
Lacticaseibacillus paracasei HD1.7 [CP025582]
786087
786015
-
Ala
GGC
-
¡û
>C181183664
CP029686
Bacillota
Lacticaseibacillus paracasei Lpc10 [CP029686]
754704
754776
+
Ala
GGC
-
¡û
>C191035794
CP025499
Bacillota
Lacticaseibacillus paracasei subsp. tolerans AO356 [CP025499]
769267
769195
-
Ala
GGC
-
¡û
>C191182677
CP040780
Bacillota
Lacticaseibacillus rhamnosus 1.0320 [CP040780]
1161929
1161857
-
Ala
GGC
-
¡û
>W1910621549
LKFJ01000025
Bacillota
Lacticaseibacillus paracasei FAM18119 [LKFJ]
44364
44292
-
Ala
GGC
[ENA]
¡û
>W1910622251
LKFW01000021
Bacillota
Lacticaseibacillus paracasei FAM19317 [LKFW]
88743
88671
-
Ala
GGC
[ENA]
¡û
>W1910622704
LKGE01000001
Bacillota
Lacticaseibacillus paracasei FAM3228 [LKGE]
519635
519563
-
Ala
GGC
[ENA]
¡û
>W1910623193
LKGN01000023
Bacillota
Lacticaseibacillus paracasei FAM8140 [LKGN]
137712
137640
-
Ala
GGC
[ENA]
¡û
>W1910923308
NIGW01000002
Bacillota
Lacticaseibacillus paracasei LMG S-29188 [NIGW]
137347
137275
-
Ala
GGC
[ENA]
¡û
>W1911422778
NXES01000011
Bacillota
Lacticaseibacillus paracasei B3 [NXES]
40641
40713
+
Ala
GGC
[ENA]
¡û
>W1911422833
NXET01000014
Bacillota
Lacticaseibacillus paracasei B2 [NXET]
18517
18589
+
Ala
GGC
[ENA]
¡û
>W1911587112
PJQS01000007
Bacillota
Lacticaseibacillus rhamnosus LR-B2 [PJQS]
119734
119662
-
Ala
GGC
[ENA]
¡û
>W1911587131
PJQT01000004
Bacillota
Lacticaseibacillus rhamnosus LR-CVC [PJQT]
119901
119829
-
Ala
GGC
[ENA]
¡û
>W1911587183
PJQU01000007
Bacillota
Lacticaseibacillus rhamnosus LR-GG-MoProbi [PJQU]
17582
17654
+
Ala
GGC
[ENA]
¡û
>W1911767434
QXET01000010
Bacillota
Lacticaseibacillus paracasei TJB4 [QXET]
8146
8074
-
Ala
GGC
[ENA]
¡û
>W1810195078
PKQJ01000002
Bacillota
Lacticaseibacillus paracasei DUP 13076 [PKQJ]
101866
101938
+
Ala
GGC
[ENA]
¡û
>W1810907588
QVHW01000005
Bacillota
Lacticaseibacillus paracasei AM33-2AC [QVHW]
138664
138592
-
Ala
GGC
[ENA]
¡û
>C151091747
CP012148
Bacillota
Lacticaseibacillus paracasei L9 [CP012148]
790318
790246
-
Ala
GGC
-
¡û
>W1510005463
BAYN01000032
Bacillota
Lacticaseibacillus paracasei NRIC 1917 NRIC1917 [BAYN]
6360
6288
-
Ala
GGC
[ENA]
¡û
>C10108269
CP001084
Bacillota
Lacticaseibacillus paracasei Zhang [CP001084]
672916
672844
-
Ala
GGC
[Ensembl]
¡û
>C11112420
CP002616
Bacillota
Lacticaseibacillus paracasei LC2W [CP002616]
786661
786589
-
Ala
GGC
[Ensembl]
¡û
>W1511446186
JUWQ01000170
Bacillota
Lacticaseibacillus rhamnosus 699_LRHA [JUWQ]
8956
8884
-
Ala
GGC
[ENA]
¡û
>W1511522425
JYBD01000003
Bacillota
Lacticaseibacillus paracasei DSM 20207 [JYBD]
57908
57836
-
Ala
GGC
[ENA]
¡û
>W1610030524
AYTQ01000059
Bacillota
Lacticaseibacillus rhamnosus L31 [AYTQ]
21388
21316
-
Ala
GGC
[ENA]
¡û
>W1610030899
AYYJ01000202
Bacillota
Lacticaseibacillus paracasei subsp. tolerans DSM 20258 [AYYJ]
205
133
-
Ala
GGC
[ENA]
¡û
>W1610543271
JTHQ01000047
Bacillota
Lacticaseibacillus rhamnosus [JTHQ]
1064
992
-
Ala
GGC
[ENA]
¡û
>W1610544539
JTIQ01000005
Bacillota
Lacticaseibacillus rhamnosus [JTIQ]
24213
24141
-
Ala
GGC
[ENA]
¡û
>W1610544804
JTIV01000260
Bacillota
Lacticaseibacillus rhamnosus [JTIV]
972
900
-
Ala
GGC
[ENA]
¡û
>W1610544823
JTIW01000001
Bacillota
Lacticaseibacillus rhamnosus [JTIW]
19917
19989
+
Ala
GGC
[ENA]
¡û
>W1610544877
JTIX01000026
Bacillota
Lacticaseibacillus rhamnosus [JTIX]
19917
19989
+
Ala
GGC
[ENA]
¡û
>W1610767421
LNQD01000052
Bacillota
Lacticaseibacillus paracasei casei [LNQD]
57235
57163
-
Ala
GGC
[ENA]
¡û
>W1710027647
AYTQ01000059
Bacillota
Lacticaseibacillus rhamnosus L31 [AYTQ]
21388
21316
-
Ala
GGC
[ENA]
¡û
>W1710027851
AYYJ01000202
Bacillota
Lacticaseibacillus paracasei subsp. tolerans DSM 20258 [AYYJ]
205
133
-
Ala
GGC
[ENA]
¡û
>W1710646402
JTHQ01000047
Bacillota
Lacticaseibacillus rhamnosus [JTHQ]
1064
992
-
Ala
GGC
[ENA]
¡û
>W1710647670
JTIQ01000005
Bacillota
Lacticaseibacillus rhamnosus [JTIQ]
24213
24141
-
Ala
GGC
[ENA]
¡û
>W1710647935
JTIV01000260
Bacillota
Lacticaseibacillus rhamnosus [JTIV]
972
900
-
Ala
GGC
[ENA]
¡û
>W1710647954
JTIW01000001
Bacillota
Lacticaseibacillus rhamnosus [JTIW]
19917
19989
+
Ala
GGC
[ENA]
¡û
>W1710648008
JTIX01000026
Bacillota
Lacticaseibacillus rhamnosus [JTIX]
19917
19989
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK