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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377610 (85 seq.)
>W1711055567
LRUZ01000036
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
87078
87152
+
Gln
TTG
[ENA]
¡û
>W1711055570
LRUZ01000039
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
116974
117048
+
Gln
TTG
[ENA]
¡û
>WENV183706972
PDWI01006156
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9690
9616
-
Gln
TTG
[ENA]
¢þ
>WENV183708157
PDWI01013449
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5083
5157
+
Gln
TTG
[ENA]
¢þ
>WENV183708308
PDWI01014581
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4976
5050
+
Gln
TTG
[ENA]
¢þ
>WENV183708825
PDWI01020239
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1159
1233
+
Gln
TTG
[ENA]
¢þ
>WENV183709536
PDWI01029528
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4071
3997
-
Gln
TTG
[ENA]
¢þ
>WENV183710989
PDWI01058063
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3666
3740
+
Gln
TTG
[ENA]
¢þ
>WENV183712172
PDWI01091160
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1765
1839
+
Gln
TTG
[ENA]
¢þ
>WENV183712832
PDWI01115536
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1539
1465
-
Gln
TTG
[ENA]
¢þ
>WENV183712970
PDWI01120341
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
966
892
-
Gln
TTG
[ENA]
¢þ
>WENV183714267
PDWI01175657
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
604
678
+
Gln
TTG
[ENA]
¢þ
>WENV183714804
PDWI01204016
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
186
260
+
Gln
TTG
[ENA]
¢þ
>WENV183715863
PDWI01268806
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
885
959
+
Gln
TTG
[ENA]
¢þ
>WENV183716040
PDWI01282519
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
115
41
-
Gln
TTG
[ENA]
¢þ
>WENV170656675
JTFO01032631
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
18
92
+
Gln
TTG
[ENA]
¢þ
>WENV170658142
JTFP01058968
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
604
678
+
Gln
TTG
[ENA]
¢þ
>WENV170686006
LFRM01121424
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2815
2889
+
Gln
TTG
[ENA]
¢þ
>WENV170689724
LFRM01308482
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
159
85
-
Gln
TTG
[ENA]
¢þ
>WENV170721009
LSQX01175751
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2844
2770
-
Gln
TTG
[ENA]
¢þ
>C181196999
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1976944
1976870
-
Gln
TTG
-
¡û
>C181197006
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1372087
1372013
-
Gln
TTG
-
¡û
>C181197010
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1359645
1359571
-
Gln
TTG
-
¡û
>C191084426
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
1864128
1864202
+
Gln
TTG
-
¡û
>C191084451
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2198220
2198146
-
Gln
TTG
-
¡û
>C191084476
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
180958
181032
+
Gln
TTG
-
¡û
>C191084503
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1433212
1433138
-
Gln
TTG
-
¡û
>C191084507
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1427804
1427730
-
Gln
TTG
-
¡û
>C191084558
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
1483800
1483726
-
Gln
TTG
-
¡û
>C191084564
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
983954
983880
-
Gln
TTG
-
¡û
>C191084568
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
570839
570765
-
Gln
TTG
-
¡û
>C191122835
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
1346032
1345958
-
Gln
TTG
-
¡û
>C191122841
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
912803
912729
-
Gln
TTG
-
¡û
>C191122845
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
533152
533078
-
Gln
TTG
-
¡û
>C191186394
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
310303
310377
+
Gln
TTG
-
¡û
>W1911424171
NXFY01000008
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
49256
49330
+
Gln
TTG
[ENA]
¡û
>W1911424175
NXFY01000008
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
54664
54738
+
Gln
TTG
[ENA]
¡û
>W1911424201
NXFY01000030
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
2879
2805
-
Gln
TTG
[ENA]
¡û
>W1911426126
NXIC01000001
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
123917
123991
+
Gln
TTG
[ENA]
¡û
>W1911426154
NXIC01000004
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
91503
91429
-
Gln
TTG
[ENA]
¡û
>W1911426163
NXIC01000006
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
30930
31004
+
Gln
TTG
[ENA]
¡û
>W1911426171
NXID01000004
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
6485
6411
-
Gln
TTG
[ENA]
¡û
>W1911426175
NXID01000004
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
5177
5103
-
Gln
TTG
[ENA]
¡û
>W1911426215
NXID01000069
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
2967
2893
-
Gln
TTG
[ENA]
¡û
>W1911426271
NXIF01000028
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
235
161
-
Gln
TTG
[ENA]
¡û
>W1911426289
NXIF01000036
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
45325
45251
-
Gln
TTG
[ENA]
¡û
>W1911426302
NXIF01000048
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
2875
2801
-
Gln
TTG
[ENA]
¡û
>W1911426317
NXIG01000004
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
205493
205419
-
Gln
TTG
[ENA]
¡û
>W1911426338
NXIG01000010
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
53509
53435
-
Gln
TTG
[ENA]
¡û
>W1911576106
PDJT01000022
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
37253
37179
-
Gln
TTG
[ENA]
¡û
>W1911576120
PDJT01000055
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
24581
24507
-
Gln
TTG
[ENA]
¡û
>W1911576260
PDJW01000060
Campylobacterota
Malaciobacter mytili T234 [PDJW]
2987
2913
-
Gln
TTG
[ENA]
¡û
>W1911576261
PDJW01000068
Campylobacterota
Malaciobacter mytili T234 [PDJW]
5359
5285
-
Gln
TTG
[ENA]
¡û
>W1911576265
PDJW01000068
Campylobacterota
Malaciobacter mytili T234 [PDJW]
5015
4941
-
Gln
TTG
[ENA]
¡û
>W1911576299
PDJX01000010
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
49265
49339
+
Gln
TTG
[ENA]
¡û
>W1911576303
PDJX01000010
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
54673
54747
+
Gln
TTG
[ENA]
¡û
>W1911576324
PDJX01000025
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
19782
19856
+
Gln
TTG
[ENA]
¡û
>W1911576412
PDJZ01000013
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
59165
59239
+
Gln
TTG
[ENA]
¡û
>W1911576423
PDJZ01000016
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
2652
2578
-
Gln
TTG
[ENA]
¡û
>W1911576482
PDKC01000004
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
68576
68502
-
Gln
TTG
[ENA]
¡û
>W1911576486
PDKC01000004
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
63066
62992
-
Gln
TTG
[ENA]
¡û
>W1911576519
PDKC01000045
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
12462
12536
+
Gln
TTG
[ENA]
¡û
>W1911576675
PDKG01000007
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
66986
67060
+
Gln
TTG
[ENA]
¡û
>W1911576824
PDKK01000001
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
416193
416267
+
Gln
TTG
[ENA]
¡û
>W1911576833
PDKK01000010
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
12840
12914
+
Gln
TTG
[ENA]
¡û
>W1911576952
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
162654
162580
-
Gln
TTG
[ENA]
¡û
>W1911576957
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
161162
161088
-
Gln
TTG
[ENA]
¡û
>W1911577001
PDKO01000002
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
314740
314814
+
Gln
TTG
[ENA]
¡û
>W1911748916
QWFD01000002
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
104005
103931
-
Gln
TTG
[ENA]
¡û
>W1911748929
QWFD01000005
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
122666
122740
+
Gln
TTG
[ENA]
¡û
>W1911748937
QWFD01000007
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
38871
38797
-
Gln
TTG
[ENA]
¡û
>W1911748958
QWFE01000002
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
104005
103931
-
Gln
TTG
[ENA]
¡û
>W1911748971
QWFE01000005
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
122666
122740
+
Gln
TTG
[ENA]
¡û
>W1911748979
QWFE01000007
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
38871
38797
-
Gln
TTG
[ENA]
¡û
>W1810584093
QEYG01000003
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
34305
34231
-
Gln
TTG
[ENA]
¡û
>W1810584105
QEYG01000034
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
977
903
-
Gln
TTG
[ENA]
¡û
>W1810584108
QEYG01000037
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
12019
11945
-
Gln
TTG
[ENA]
¡û
>W1810584138
QEYH01000002
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
104005
103931
-
Gln
TTG
[ENA]
¡û
>W1810584151
QEYH01000005
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
122666
122740
+
Gln
TTG
[ENA]
¡û
>W1810584159
QEYH01000007
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
38871
38797
-
Gln
TTG
[ENA]
¡û
>W1810584191
QEYI01000003
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
14108
14034
-
Gln
TTG
[ENA]
¡û
>W1810584193
QEYI01000004
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
128851
128925
+
Gln
TTG
[ENA]
¡û
>W1810584202
QEYI01000008
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
33030
32956
-
Gln
TTG
[ENA]
¡û
>W1610896613
LRUZ01000036
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
87078
87152
+
Gln
TTG
[ENA]
¡û
>W1610896616
LRUZ01000039
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
116974
117048
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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