This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377852 (64 seq.)
>W1710785569
LJHZ01000009
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
12597
12671
+
Thr
TGT
[ENA]
¡û
>W1710856817
LLZQ01000020
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
66008
66082
+
Thr
TGT
[ENA]
¡û
>W1710856867
LLZR01000024
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
950
1024
+
Thr
TGT
[ENA]
¡û
>W1710882254
LMTR01000081
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
3652
3726
+
Thr
TGT
[ENA]
¡û
>W1710991254
LPXN01000135
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
17839
17765
-
Thr
TGT
[ENA]
¡û
>W131221571
AUAO01000003
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
270504
270430
-
Thr
TGT
[ENA]
¡û
>W1711434827
MINO01000031
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
24605
24679
+
Thr
TGT
[ENA]
¡û
>W1711628154
MPOB01000005
Alphaproteobacteria
Oceanibaculum nanhaiense L54-1-50 [MPOB]
377286
377212
-
Thr
TGT
[ENA]
¡û
>W1711793156
MWLJ01000047
Alphaproteobacteria
Rhodomicrobium vannielii [MWLJ]
111340
111266
-
Thr
TGT
[ENA]
¡û
>W1711793201
MWLK01000036
Alphaproteobacteria
Rhodomicrobium sp. R_RK_3 vannielii [MWLK]
111345
111271
-
Thr
TGT
[ENA]
¡û
>C171074603
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1849032
1849106
+
Thr
TGT
-
¡û
>C171117063
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
4706568
4706494
-
Thr
TGT
-
¡û
>W131196607
ASTM01000174
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
27718
27792
+
Thr
TGT
[ENA]
¡û
>W131045453
AMRL01000035
Alphaproteobacteria
Oceanibaculum indicum P24 [AMRL]
3125
3199
+
Thr
TGT
[ENA]
¡û
>WENV180020663
FTCZ01008043
[FTCZ] metagenome; soil
2271
2345
+
Thr
TGT
[ENA]
¢þ
>WENV180590823
OCOU01015850
[OCOU] marine metagenome; Water
241
315
+
Thr
TGT
[ENA]
¢þ
>W141090239
AUWY01000048
Alphaproteobacteria
Sphingobium ummariense RL-3 [AUWY]
94125
94199
+
Thr
TGT
[ENA]
¡û
>WENV181145264
OEHO01248140
[OEHO] metagenome; unknown
63
137
+
Thr
TGT
[ENA]
¢þ
>WENV181145484
OEHO01320787
[OEHO] metagenome; unknown
143
69
-
Thr
TGT
[ENA]
¢þ
>WENV181164995
OEIR01508571
[OEIR] soil metagenome; soil
84
158
+
Thr
TGT
[ENA]
¢þ
>WENV181169943
OEIV010015757
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1537
1463
-
Thr
TGT
[ENA]
¢þ
>WENV181223428
OFDC01014960
[OFDC] hot springs metagenome; Water
690
616
-
Thr
TGT
[ENA]
¢þ
>WENV181227141
OFDN01002255
[OFDN] hot springs metagenome; Water
7340
7266
-
Thr
TGT
[ENA]
¢þ
>WENV181295866
OFHJ01001438
[OFHJ] soil metagenome; Clay
1430
1503
+
Thr
TGT
[ENA]
¢þ
>WENV181378532
OFRB01015898
[OFRB] wastewater metagenome; Exp Tend CN 0WW
356
282
-
Thr
TGT
[ENA]
¢þ
>WENV181378957
OFRC01005479
[OFRC] wastewater metagenome; Exp Tend CN 10WW
579
653
+
Thr
TGT
[ENA]
¢þ
>WENV181381837
OFRF01016261
[OFRF] wastewater metagenome; Exp Tend CN 50WW
548
622
+
Thr
TGT
[ENA]
¢þ
>WENV182555410
OJDA01000197
[OJDA] seawater metagenome; Sea water
9688
9762
+
Thr
TGT
[ENA]
¢þ
>WENV183731473
PJTT01000006
[PJTT] soil metagenome; Soil (2) enriched on wood chips
285947
285873
-
Thr
TGT
[ENA]
¢þ
>WENV183747842
PPFU01000519
[PPFU] hypolithon metagenome; Antarctic Hypolithon
35284
35210
-
Thr
TGT
[ENA]
¢þ
>WENV170014045
AVFP01003455
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
974
1048
+
Thr
TGT
[ENA]
¢þ
>W141452331
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1231201
1231127
-
Thr
TGT
[ENA]
¡û
>C191100521
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
505632
505558
-
Thr
TGT
-
¡û
>C191158428
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
1712819
1712893
+
Thr
TGT
-
¡û
>C191170961
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
2682698
2682772
+
Thr
TGT
-
¡û
>W1910547469
FZNU01000003
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
204297
204223
-
Thr
TGT
[ENA]
¡û
>W1810000629
BEWL01000014
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
16733
16659
-
Thr
TGT
[ENA]
¡û
>W1810000650
BEWM01000002
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
630135
630061
-
Thr
TGT
[ENA]
¡û
>W1810195676
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
1076649
1076723
+
Thr
TGT
[ENA]
¡û
>W1810604028
QGLT01000002
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
8010
7936
-
Thr
TGT
[ENA]
¡û
>W1810725214
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
574371
574445
+
Thr
TGT
[ENA]
¡û
>W1810917819
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
1558135
1558209
+
Thr
TGT
[ENA]
¡û
>W1511590545
LBHB01000003
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
155433
155359
-
Thr
TGT
[ENA]
¡û
>W1511620432
LCTG01000002
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
1201137
1201063
-
Thr
TGT
[ENA]
¡û
>W11151082
AEWJ01000044
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
199120
199194
+
Thr
TGT
[ENA]
¡û
>C161099959
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
1564635
1564561
-
Thr
TGT
[Ensembl]
¡û
>W1610026889
AVFK01000014
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
3459
3533
+
Thr
TGT
[ENA]
¡û
>W121034430
AHKO01000334
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
356
430
+
Thr
TGT
[ENA]
¡û
>W1610041054
BANC01000059
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
80400
80474
+
Thr
TGT
[ENA]
¡û
>W1610076940
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
178637
178563
-
Thr
TGT
[ENA]
¡û
>W1610624573
LHZN01000113
Alphaproteobacteria
Gluconobacter albidus [LHZN]
18397
18471
+
Thr
TGT
[ENA]
¡û
>W1610649375
LJHZ01000009
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
12597
12671
+
Thr
TGT
[ENA]
¡û
>W1610719198
LLZQ01000020
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
66008
66082
+
Thr
TGT
[ENA]
¡û
>W1610719248
LLZR01000024
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
950
1024
+
Thr
TGT
[ENA]
¡û
>W1610744180
LMTR01000081
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
3652
3726
+
Thr
TGT
[ENA]
¡û
>W1610845926
LPXN01000135
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
17839
17765
-
Thr
TGT
[ENA]
¡û
>W1611004957
LXQM01000003
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
133222
133296
+
Thr
TGT
[ENA]
¡û
>W1710023054
AVFK01000014
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
3459
3533
+
Thr
TGT
[ENA]
¡û
>W1710038252
BANC01000059
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
80400
80474
+
Thr
TGT
[ENA]
¡û
>W1710074629
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
178637
178563
-
Thr
TGT
[ENA]
¡û
>W1710584178
FQVJ01000001
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
154481
154407
-
Thr
TGT
[ENA]
¡û
>W1710602765
FUYM01000014
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
961
887
-
Thr
TGT
[ENA]
¡û
>W1710624797
JOPH01000005
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
49424
49498
+
Thr
TGT
[ENA]
¡û
>W1710755691
LHZN01000113
Alphaproteobacteria
Gluconobacter albidus [LHZN]
18397
18471
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK