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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37833 (66 seq.)
>W1710853427
LLWQ01000217
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
1855
1766
-
Ser
GGA
[ENA]
¡û
>W1710889757
LNBC01000030
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
123451
123540
+
Ser
GGA
[ENA]
¡û
>W131181548
ARPB01000005
Alphaproteobacteria
alpha proteobacterium SCGC AAA300-J04 [ARPB]
8516
8605
+
Ser
GGA
[ENA]
¡û
>W131223019
AUBS01000015
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
6554
6465
-
Ser
GGA
[ENA]
¡û
>W1712104736
NIPZ01000003
Alphaproteobacteria
Paracoccus yeei [NIPZ]
3404
3493
+
Ser
GGA
[ENA]
¡û
>C171110798
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
72716
72627
-
Ser
GGA
-
¡û
>W131158919
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
637412
637323
-
Ser
GGA
[ENA]
¡û
>WENV012580
AACY020342492
Marine microbial communities from Global Ocean Sampling (GOS)
706
795
+
Ser
GGA
[ENA]
>WENV018321
AACY020506090
Marine microbial communities from Global Ocean Sampling (GOS)
200
111
-
Ser
GGA
[ENA]
>WENV018778
AACY020517939
Marine microbial communities from Global Ocean Sampling (GOS)
1442
1353
-
Ser
GGA
[ENA]
>W141216624
AZVA01000005
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
173424
173513
+
Ser
GGA
[ENA]
¡û
>W141277320
JAEM01000043
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
9893
9804
-
Ser
GGA
[ENA]
¡û
>W141277354
JAEN01000009
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
39037
39126
+
Ser
GGA
[ENA]
¡û
>W141279584
JAGK01000020
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
24162
24073
-
Ser
GGA
[ENA]
¡û
>WENV183729327
PJTQ01022258
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
760
849
+
Ser
GGA
[ENA]
¢þ
>WENV170347060
CETG01096723
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
149
238
+
Ser
GGA
[ENA]
¢þ
>WENV170750917
LUMH01005054
[LUMH] marine metagenome; Red Sea water column Station 34 - depth 25m
93
4
-
Ser
GGA
[ENA]
¢þ
>WENV170758418
LUMR01002247
[LUMR] marine metagenome; Red Sea water column Station 12 - depth 10m
437
348
-
Ser
GGA
[ENA]
¢þ
>WENV170835314
MDSZ01111445
[MDSZ] marine metagenome; seawater
2789
2700
-
Ser
GGA
[ENA]
¢þ
>C181099810
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
181238
181149
-
Ser
GGA
-
¡û
>C181119687
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
1377143
1377054
-
Ser
GGA
-
¡û
>C181203413
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
2296258
2296169
-
Ser
GGA
-
¡û
>C191073598
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2184486
2184397
-
Ser
GGA
-
¡û
>W09103073
AAIT01000027
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
22635
22546
-
Ser
GGA
[ENA]
¡û
>W141558887
JHWH01000038
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
15933
16022
+
Ser
GGA
[ENA]
¡û
>WENV024858
AACY020842702
Marine microbial communities from Global Ocean Sampling (GOS)
207
296
+
Ser
GGA
[ENA]
>W1810236002
PPGA01000025
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
18036
18125
+
Ser
GGA
[ENA]
¡û
>W1810268894
PRDS01000003
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
288414
288503
+
Ser
GGA
[ENA]
¡û
>W1810585305
QFCQ01000008
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
3442
3531
+
Ser
GGA
[ENA]
¡û
>SRA1008060
SRR020490.186090
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
27
116
+
Ser
GGA
[SRA]
>SRA1008173
SRR020490.234913
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
27
116
+
Ser
GGA
[SRA]
>W1810697115
QLUV01000003
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
37662
37573
-
Ser
GGA
[ENA]
¡û
>W1810750729
QOZU01000005
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
34731
34642
-
Ser
GGA
[ENA]
¡û
>W1810762340
QPML01000104
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
11472
11383
-
Ser
GGA
[ENA]
¡û
>W1810884843
QUMX01000005
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
28061
28150
+
Ser
GGA
[ENA]
¡û
>WENV035183
AACY021675993
Marine microbial communities from Global Ocean Sampling (GOS)
181
92
-
Ser
GGA
[ENA]
>WENV037057
AACY021828858
Marine microbial communities from Global Ocean Sampling (GOS)
737
826
+
Ser
GGA
[ENA]
>WENV037369
AACY021852750
Marine microbial communities from Global Ocean Sampling (GOS)
227
316
+
Ser
GGA
[ENA]
>WENV037419
AACY021856364
Marine microbial communities from Global Ocean Sampling (GOS)
526
615
+
Ser
GGA
[ENA]
>WENV039621
AACY022022636
Marine microbial communities from Global Ocean Sampling (GOS)
659
570
-
Ser
GGA
[ENA]
>WENV004113
AACY020115355
Marine microbial communities from Global Ocean Sampling (GOS)
1663
1752
+
Ser
GGA
[ENA]
>W1511348575
JRKN01000048
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
14676
14765
+
Ser
GGA
[ENA]
¡û
>W1511348594
JRKO01000007
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
108658
108569
-
Ser
GGA
[ENA]
¡û
>W1511348641
JRKP01000012
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
20358
20447
+
Ser
GGA
[ENA]
¡û
>W1511348689
JRKQ01000024
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
8323
8412
+
Ser
GGA
[ENA]
¡û
>W1511348757
JRKR01000131
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
7686
7775
+
Ser
GGA
[ENA]
¡û
>W1511348766
JRKS01000001
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
166160
166249
+
Ser
GGA
[ENA]
¡û
>W1511348838
JRKT01000052
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
14295
14206
-
Ser
GGA
[ENA]
¡û
>WENV044770
AACY022451814
Marine microbial communities from Global Ocean Sampling (GOS)
383
472
+
Ser
GGA
[ENA]
>WENV050626
AACY022889124
Marine microbial communities from Global Ocean Sampling (GOS)
311
402
+
Ser
GGA
[ENA]
>WENV054066
AACY023136910
Marine microbial communities from Global Ocean Sampling (GOS)
122
33
-
Ser
GGA
[ENA]
>WENV066092
AACY023629642
Marine microbial communities from Global Ocean Sampling (GOS)
140
51
-
Ser
GGA
[ENA]
>WENV070726
AACY023820233
Marine microbial communities from Global Ocean Sampling (GOS)
342
251
-
Ser
GGA
[ENA]
>W1610716551
LLWQ01000217
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
1855
1766
-
Ser
GGA
[ENA]
¡û
>W1610750135
LNBC01000030
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
123451
123540
+
Ser
GGA
[ENA]
¡û
>W1710513620
FNAH01000005
Alphaproteobacteria
Paracoccus isoporae [FNAH]
216237
216326
+
Ser
GGA
[ENA]
¡û
>W1710518480
FNEA01000044
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
21731
21820
+
Ser
GGA
[ENA]
¡û
>W1710521172
FNGE01000005
Alphaproteobacteria
Paracoccus chinensis [FNGE]
2348
2259
-
Ser
GGA
[ENA]
¡û
>W1710528221
FNNA01000003
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
20326
20415
+
Ser
GGA
[ENA]
¡û
>W1710555571
FOJO01000045
Alphaproteobacteria
Paracoccus halophilus [FOJO]
1518
1429
-
Ser
GGA
[ENA]
¡û
>W1710563592
FOPU01000023
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
55259
55348
+
Ser
GGA
[ENA]
¡û
>W1710571587
FOWA01000066
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
690
601
-
Ser
GGA
[ENA]
¡û
>W1710574555
FOYI01000003
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
326199
326288
+
Ser
GGA
[ENA]
¡û
>W1710574701
FOYK01000044
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
5822
5733
-
Ser
GGA
[ENA]
¡û
>W1710596189
FTMK01000007
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
108937
108848
-
Ser
GGA
[ENA]
¡û
>W1710608136
FXAQ01000044
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
13686
13775
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK