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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.378471 (42 seq.)
>C171070664
CP017962
Bacillota
Virgibacillus halodenitrificans PDB-F2 [CP017962]
208737
208811
+
Gln
TTG
-
¡û
>C171070670
CP017962
Bacillota
Virgibacillus halodenitrificans PDB-F2 [CP017962]
456685
456759
+
Gln
TTG
-
¡û
>C171070690
CP017962
Bacillota
Virgibacillus halodenitrificans PDB-F2 [CP017962]
659996
660070
+
Gln
TTG
-
¡û
>W141028978
ALEF01000031
Bacillota
Virgibacillus halodenitrificans 1806 [ALEF]
91092
91018
-
Gln
TTG
[ENA]
¡û
>W141028990
ALEF01000033
Bacillota
Virgibacillus halodenitrificans 1806 [ALEF]
1218
1292
+
Gln
TTG
[ENA]
¡û
>W141029010
ALEF01000081
Bacillota
Virgibacillus halodenitrificans 1806 [ALEF]
726
652
-
Gln
TTG
[ENA]
¡û
>WENV170689101
LFRM01276967
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
598
527
-
Gln
TTG
[ENA]
¢þ
>W141451556
JFBD01000110
Bacillota
Virgibacillus alimentarius [JFBD]
211
137
-
Gln
TTG
[ENA]
¡û
>C191098947
CP033048
Bacillota
Virgibacillus sp. Bac330 [CP033048]
3225057
3224983
-
Gln
TTG
-
¡û
>W1910373702
FUHR01000005
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
253653
253579
-
Gln
TTG
[ENA]
¡û
>W1910373708
FUHR01000005
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
1362
1288
-
Gln
TTG
[ENA]
¡û
>W1910373728
FUHR01000006
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
577026
576952
-
Gln
TTG
[ENA]
¡û
>W1910374420
FUIH01000006
Bacillota
Virgibacillus siamensis Marseille-P2607 [FUIH]
6135
6208
+
Gln
TTG
[ENA]
¡û
>W1910469549
FWYO01000013
Bacillota
Oceanobacillus senegalensis Marseille-P3587 [FWYO]
170316
170242
-
Gln
TTG
[ENA]
¡û
>W1910469596
FWYO01000019
Bacillota
Oceanobacillus senegalensis Marseille-P3587 [FWYO]
1834
1760
-
Gln
TTG
[ENA]
¡û
>W1910469727
FWYO01000036
Bacillota
Oceanobacillus senegalensis Marseille-P3587 [FWYO]
55677
55751
+
Gln
TTG
[ENA]
¡û
>W1910896736
NFZX01000033
Bacillota
Virgibacillus dokdonensis AK90 [NFZX]
38679
38753
+
Gln
TTG
[ENA]
¡û
>W1911161502
NPOA01000003
Bacillota
Virgibacillus profundi IO3-P3-H5 [NPOA]
286739
286813
+
Gln
TTG
[ENA]
¡û
>W1911161529
NPOA01000014
Bacillota
Virgibacillus profundi IO3-P3-H5 [NPOA]
16254
16328
+
Gln
TTG
[ENA]
¡û
>W1911161546
NPOA01000031
Bacillota
Virgibacillus profundi IO3-P3-H5 [NPOA]
748
674
-
Gln
TTG
[ENA]
¡û
>W1911748501
QWEH01000017
Bacillota
Oceanobacillus profundus DSM 18246 [QWEH]
6282
6356
+
Gln
TTG
[ENA]
¡û
>W1810144979
PIOD01000023
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
1347
1421
+
Gln
TTG
[ENA]
¡û
>W1810145000
PIOD01000029
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
82043
82117
+
Gln
TTG
[ENA]
¡û
>W1810145013
PIOD01000030
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
17198
17272
+
Gln
TTG
[ENA]
¡û
>W1810679837
QKRG01000011
Bacillota
Bacilli bacterium VT-841 [QKRG]
1301
1375
+
Gln
TTG
[ENA]
¡û
>W1810679879
QKRG01000052
Bacillota
Bacilli bacterium VT-841 [QKRG]
1352
1280
-
Gln
TTG
[ENA]
¡û
>W1810679908
QKRG01000067
Bacillota
Bacilli bacterium VT-841 [QKRG]
926
1000
+
Gln
TTG
[ENA]
¡û
>C151017784
CP007161
Bacillota
Virgibacillus sp. SK37 [CP007161]
202131
202205
+
Gln
TTG
[Ensembl]
¡û
>C151017790
CP007161
Bacillota
Virgibacillus sp. SK37 [CP007161]
559546
559620
+
Gln
TTG
[Ensembl]
¡û
>C151017810
CP007161
Bacillota
Virgibacillus sp. SK37 [CP007161]
775863
775937
+
Gln
TTG
[Ensembl]
¡û
>W1511640205
LDPV02000049
Bacillota
Ornithinibacillus contaminans DSM 22953 [LDPV]
63676
63750
+
Gln
TTG
[ENA]
¡û
>W1511640223
LDPV02000051
Bacillota
Ornithinibacillus contaminans DSM 22953 [LDPV]
4261
4335
+
Gln
TTG
[ENA]
¡û
>W1511640427
LDUE01000070
Bacillota
Ornithinibacillus californiensis DSM 16628 [LDUE]
59710
59638
-
Gln
TTG
[ENA]
¡û
>W1610135844
FACE01003691
Bacillota
Clostridioides difficile [FACE]
65
139
+
Gln
TTG
[ENA]
¡û
>W1610617370
LGTK01000029
Bacillota
Oceanobacillus caeni [LGTK]
36211
36283
+
Gln
TTG
[ENA]
¡û
>W1610617408
LGTK01000099
Bacillota
Oceanobacillus caeni [LGTK]
6887
6813
-
Gln
TTG
[ENA]
¡û
>W1610617429
LGTK01000159
Bacillota
Oceanobacillus caeni [LGTK]
482
408
-
Gln
TTG
[ENA]
¡û
>W1710137511
FACE01003691
Bacillota
Clostridioides difficile [FACE]
65
139
+
Gln
TTG
[ENA]
¡û
>W1710582739
FQUF01000027
Bacillota
Atopostipes suicloacalis DSM 15692 [FQUF]
31734
31808
+
Gln
TTG
[ENA]
¡û
>W1710742957
LGTK01000029
Bacillota
Oceanobacillus caeni [LGTK]
36211
36283
+
Gln
TTG
[ENA]
¡û
>W1710742995
LGTK01000099
Bacillota
Oceanobacillus caeni [LGTK]
6887
6813
-
Gln
TTG
[ENA]
¡û
>W1710743016
LGTK01000159
Bacillota
Oceanobacillus caeni [LGTK]
482
408
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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