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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.379268 (4 seq.)
>W1711411374
MGTA01000167
Unclassified
Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9 [MGTA]
51236
51310
+
Gln
TTG
[ENA]
¡û
>W2010859785
MGRK01000047
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_44 [MGRK]
10605
10531
-
Gln
TTG
[ENA]
¡û
>W2010860171
MGRV01000251
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_01_FULL_42_9 [MGRV]
2794
2720
-
Gln
TTG
[ENA]
¡û
>W2010860324
MGSA01000057
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_42_39 [MGSA]
2994
3068
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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