This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.379302 (105 seq.)
>W1711043898
LRMP01000004
Actinomycetota
Brachybacterium sp. sponge [LRMP]
515501
515427
-
Val
GAC
[ENA]
¡û
>W1711186254
LWOB01000252
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
842
916
+
Val
GAC
[ENA]
¡û
>W131230053
AUHH01000010
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
143585
143659
+
Val
GAC
[ENA]
¡û
>W131230076
AUHH01000051
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
191
265
+
Val
GAC
[ENA]
¡û
>W1711664137
MQVR01000005
Actinomycetota
Bowdeniella nasicola [MQVR]
34295
34369
+
Val
GAC
[ENA]
¡û
>W1711717991
MTHC01000001
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
481537
481611
+
Val
GAC
[ENA]
¡û
>W1711774063
MVIV01000004
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
80740
80668
-
Val
GAC
[ENA]
¡û
>W1711774086
MVIV01000012
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
22640
22712
+
Val
GAC
[ENA]
¡û
>WENV011242
AACY020306552
Marine microbial communities from Global Ocean Sampling (GOS)
1426
1350
-
Val
GAC
[ENA]
>C171060451
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
318294
318368
+
Val
GAC
-
¡û
>C171060493
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
317462
317388
-
Val
GAC
-
¡û
>C171108529
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
992593
992665
+
Val
GAC
-
¡û
>W131161285
AQXM01000060
Actinomycetota
Acaricomes phytoseiuli DSM 14247 [AQXM]
23882
23808
-
Val
GAC
[ENA]
¡û
>W131191133
ASHR01000001
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
94463
94389
-
Val
GAC
[ENA]
¡û
>W131217102
ATWL01000001
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
89447
89521
+
Val
GAC
[ENA]
¡û
>W131221357
AUAK01000002
Actinomycetota
Actinomyces slackii ATCC 49928 [AUAK]
177857
177783
-
Val
GAC
[ENA]
¡û
>W131221390
AUAK01000028
Actinomycetota
Actinomyces slackii ATCC 49928 [AUAK]
38598
38672
+
Val
GAC
[ENA]
¡û
>W131234905
AULD01000016
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
2267
2341
+
Val
GAC
[ENA]
¡û
>W131236630
AUMN01000002
Actinomycetota
Arthrobacter castelli DSM 16402 [AUMN]
368224
368298
+
Val
GAC
[ENA]
¡û
>WENV180034662
FTKR01071074
[FTKR] metagenome; soil
1635
1561
-
Val
GAC
[ENA]
¢þ
>WENV180103115
OAPA01002296
[OAPA] marine metagenome; ENVO:00002010
1034
962
-
Val
GAC
[ENA]
¢þ
>WENV180114476
OAPS01011269
[OAPS] marine metagenome; sea water
463
389
-
Val
GAC
[ENA]
¢þ
>WENV180209193
OBAK01034933
[OBAK] marine metagenome; ENVO.00002150
388
459
+
Val
GAC
[ENA]
¢þ
>W141024114
AKGF01000025
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
125838
125910
+
Val
GAC
[ENA]
¡û
>W141024119
AKGF01000029
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
40602
40530
-
Val
GAC
[ENA]
¡û
>WENV180369334
OBOG01078947
[OBOG] marine metagenome; seawater
196
269
+
Val
GAC
[ENA]
¢þ
>WENV180395478
OBPT01027077
[OBPT] marine metagenome; ENVO:00002010 seawater
740
668
-
Val
GAC
[ENA]
¢þ
>WENV180399513
OBQO01000044
[OBQO] marine metagenome; ENVO:00002010
4874
4802
-
Val
GAC
[ENA]
¢þ
>WENV180650463
OCSY01036778
[OCSY] marine metagenome; 30 L Plastic container
317
242
-
Val
GAC
[ENA]
¢þ
>WENV181162972
OEIO01050002
[OEIO] marine metagenome; sea ice
295
220
-
Val
GAC
[ENA]
¢þ
>WENV181313844
OFJH01013198
[OFJH] marine metagenome; seawater
400
474
+
Val
GAC
[ENA]
¢þ
>WENV181322072
OFKP01003137
[OFKP] marine metagenome; sea ice
160
85
-
Val
GAC
[ENA]
¢þ
>WENV181324125
OFLC01000180
[OFLC] marine metagenome; melt pond
3115
3190
+
Val
GAC
[ENA]
¢þ
>WENV181324505
OFLF01000120
[OFLF] marine metagenome; melt pond
2846
2771
-
Val
GAC
[ENA]
¢þ
>WENV181385841
OFRK01020107
[OFRK] marine metagenome; sea ice
355
430
+
Val
GAC
[ENA]
¢þ
>W141203596
AZIS01000005
Actinomycetota
Propionimicrobium sp. BV2F7 [AZIS]
462920
462994
+
Val
GAC
[ENA]
¡û
>WENV019074
AACY020525377
Marine microbial communities from Global Ocean Sampling (GOS)
258
334
+
Val
GAC
[ENA]
>WENV019094
AACY020525661
Marine microbial communities from Global Ocean Sampling (GOS)
1281
1355
+
Val
GAC
[ENA]
>WENV019246
AACY020528579
Marine microbial communities from Global Ocean Sampling (GOS)
3247
3173
-
Val
GAC
[ENA]
>WENV019332
AACY020530257
Marine microbial communities from Global Ocean Sampling (GOS)
888
814
-
Val
GAC
[ENA]
>WENV182645410
OJLY01017647
[OJLY] metagenome; surface
1015
941
-
Val
GAC
[ENA]
¢þ
>WENV019349
AACY020530598
Marine microbial communities from Global Ocean Sampling (GOS)
2280
2354
+
Val
GAC
[ENA]
>WENV019414
AACY020531740
Marine microbial communities from Global Ocean Sampling (GOS)
1686
1610
-
Val
GAC
[ENA]
>WENV019618
AACY020535659
Marine microbial communities from Global Ocean Sampling (GOS)
1874
1948
+
Val
GAC
[ENA]
>WENV019749
AACY020538240
Marine microbial communities from Global Ocean Sampling (GOS)
1576
1650
+
Val
GAC
[ENA]
>WENV183623232
OOFX01038274
[OOFX] marine metagenome; sea ice
388
463
+
Val
GAC
[ENA]
¢þ
>WENV183629349
OOGP01026624
[OOGP] marine metagenome; seawater
599
674
+
Val
GAC
[ENA]
¢þ
>WENV183629849
OOGQ01021434
[OOGQ] marine metagenome; seawater
518
445
-
Val
GAC
[ENA]
¢þ
>WENV170567424
FLMP01000425
[FLMP] seawater metagenome; seawater
9322
9247
-
Val
GAC
[ENA]
¢þ
>W09108359
ABTF01000001
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
37156
37230
+
Val
GAC
[ENA]
¡û
>W09108377
ABTF01000001
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
36173
36099
-
Val
GAC
[ENA]
¡û
>C181143735
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
1119061
1119135
+
Val
GAC
-
¡û
>C181199699
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
940244
940318
+
Val
GAC
-
¡û
>C181199735
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
939422
939348
-
Val
GAC
-
¡û
>C191030329
CP025227
Actinomycetota
Actinomyces wuliandei 299 [CP025227]
1399541
1399615
+
Val
GAC
-
¡û
>C191030349
CP025227
Actinomycetota
Actinomyces wuliandei 299 [CP025227]
1585463
1585391
-
Val
GAC
-
¡û
>C191127977
CP034593
Actinomycetota
Flaviflexus ciconiae H23T48 [CP034593]
641129
641203
+
Val
GAC
-
¡û
>C191208958
LR134363
Actinomycetota
Actinomyces slackii NCTC11923 [LR134363]
2447256
2447183
-
Val
GAC
-
¡û
>C191208962
LR134363
Actinomycetota
Actinomyces slackii NCTC11923 [LR134363]
2153806
2153732
-
Val
GAC
-
¡û
>WENV022278
AACY020636835
Marine microbial communities from Global Ocean Sampling (GOS)
219
143
-
Val
GAC
[ENA]
>WENV024313
AACY020796011
Marine microbial communities from Global Ocean Sampling (GOS)
158
232
+
Val
GAC
[ENA]
>W1910341019
FTPB01000004
Actinomycetota
Actinomyces mediterranea Marseille-P3257 [FTPB]
309581
309653
+
Val
GAC
[ENA]
¡û
>W1911693695
QLVF01000119
Actinomycetota
Aeromicrobium lacus CPCC 204604 [QLVF]
1631
1705
+
Val
GAC
[ENA]
¡û
>W1911702250
QOCI01000018
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
32054
32127
+
Val
GAC
[ENA]
¡û
>W1911765346
QXCP01000005
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
29506
29580
+
Val
GAC
[ENA]
¡û
>W1911765354
QXCP01000005
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
28846
28772
-
Val
GAC
[ENA]
¡û
>W1911798511
QYRR01000001
Actinomycetota
Actinomyces sp. 2119 [QYRR]
104116
104188
+
Val
GAC
[ENA]
¡û
>W1911798517
QYRR01000001
Actinomycetota
Actinomyces sp. 2119 [QYRR]
293183
293109
-
Val
GAC
[ENA]
¡û
>W1911823602
QZVS01000076
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
500
428
-
Val
GAC
[ENA]
¡û
>W1810167565
PJIO01000020
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
16806
16732
-
Val
GAC
[ENA]
¡û
>W1810196901
PNFB01000021
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
36568
36642
+
Val
GAC
[ENA]
¡û
>W1810196903
PNFB01000021
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
35809
35735
-
Val
GAC
[ENA]
¡û
>SRA1004063
SRR002328.127487
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
135
209
+
Val
GAC
[SRA]
>SRA1004262
SRR002328.230418
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
121
47
-
Val
GAC
[SRA]
>W1810673907
QJVC01000009
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
72974
73046
+
Val
GAC
[ENA]
¡û
>W1810673963
QJVD01000008
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
72864
72791
-
Val
GAC
[ENA]
¡û
>WENV028430
AACY021120992
Marine microbial communities from Global Ocean Sampling (GOS)
759
833
+
Val
GAC
[ENA]
>SRA1024667
SRR035084.372476
454 Sequencing (SRP001805)
254
180
-
Val
GAC
[SRA]
>WENV030334
AACY021274515
Marine microbial communities from Global Ocean Sampling (GOS)
466
540
+
Val
GAC
[ENA]
>WENV035615
AACY021710720
Marine microbial communities from Global Ocean Sampling (GOS)
538
464
-
Val
GAC
[ENA]
>W1510544478
CSSZ01000008
Actinomycetota
Flaviflexus massiliensis SIT4 [CSSZ]
1536031
1536105
+
Val
GAC
[ENA]
¡û
>WENV040492
AACY022087651
Marine microbial communities from Global Ocean Sampling (GOS)
71
147
+
Val
GAC
[ENA]
>WENV040520
AACY022089965
Marine microbial communities from Global Ocean Sampling (GOS)
271
345
+
Val
GAC
[ENA]
>WENV040545
AACY022091493
Marine microbial communities from Global Ocean Sampling (GOS)
19
95
+
Val
GAC
[ENA]
>WENV043944
AACY022372190
Marine microbial communities from Global Ocean Sampling (GOS)
191
267
+
Val
GAC
[ENA]
>WENV045483
AACY022521471
Marine microbial communities from Global Ocean Sampling (GOS)
220
294
+
Val
GAC
[ENA]
>C161052860
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3063457
3063383
-
Val
GAC
[Ensembl]
¡û
>C161052862
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3063187
3063113
-
Val
GAC
[Ensembl]
¡û
>W1610068013
BCQZ01000009
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
497
423
-
Val
GAC
[ENA]
¡û
>W1610068036
BCQZ01000031
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
257
331
+
Val
GAC
[ENA]
¡û
>WENV070201
AACY023801046
Marine microbial communities from Global Ocean Sampling (GOS)
1348
1274
-
Val
GAC
[ENA]
>WENV070453
AACY023809570
Marine microbial communities from Global Ocean Sampling (GOS)
140
66
-
Val
GAC
[ENA]
>WENV070611
AACY023816315
Marine microbial communities from Global Ocean Sampling (GOS)
321
397
+
Val
GAC
[ENA]
>WENV070712
AACY023819872
Marine microbial communities from Global Ocean Sampling (GOS)
265
339
+
Val
GAC
[ENA]
>WENV071104
AACY023835375
Marine microbial communities from Global Ocean Sampling (GOS)
1217
1141
-
Val
GAC
[ENA]
>WENV071226
AACY023839962
Marine microbial communities from Global Ocean Sampling (GOS)
1207
1133
-
Val
GAC
[ENA]
>WENV071407
AACY023846489
Marine microbial communities from Global Ocean Sampling (GOS)
1144
1070
-
Val
GAC
[ENA]
>W1610625731
LIBA01000117
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
75
1
-
Val
GAC
[ENA]
¡û
>WENV074157
AACY023960239
Marine microbial communities from Global Ocean Sampling (GOS)
331
255
-
Val
GAC
[ENA]
>W1610885197
LRMP01000004
Actinomycetota
Brachybacterium sp. sponge [LRMP]
515501
515427
-
Val
GAC
[ENA]
¡û
>W1710065386
BCQZ01000009
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
497
423
-
Val
GAC
[ENA]
¡û
>W1710065409
BCQZ01000031
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
257
331
+
Val
GAC
[ENA]
¡û
>W1710587367
FQYL01000003
Actinomycetota
Actinomyces denticolens [FQYL]
207086
207158
+
Val
GAC
[ENA]
¡û
>W1710587405
FQYL01000015
Actinomycetota
Actinomyces denticolens [FQYL]
25262
25334
+
Val
GAC
[ENA]
¡û
>W1710756858
LIBA01000117
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
75
1
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK