This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.379881 (14 seq.)
>w022469
AAWN01000023
Thermodesulfobacteriota
Desulfosudis oleivorans oleovorans Hxd3 [AAWN]
5222
5297
+
Ala
GGC
[ENA]
¡û
>WENV181248702
OFFM01000003
[OFFM] mouse gut metagenome; faeces
377404
377329
-
Ala
GGC
[ENA]
¢þ
>WENV181254858
OFFS01000002
[OFFS] mouse gut metagenome; faeces
4357
4432
+
Ala
GGC
[ENA]
¢þ
>WENV181254875
OFFS01000002
[OFFS] mouse gut metagenome; faeces
599
524
-
Ala
GGC
[ENA]
¢þ
>WENV181267709
OFGD01000002
[OFGD] mouse gut metagenome; faeces
416534
416459
-
Ala
GGC
[ENA]
¢þ
>WENV181274606
OFGI01000993
[OFGI] mouse gut metagenome; faeces
14
89
+
Ala
GGC
[ENA]
¢þ
>W141203116
AZHW01001505
Unclassified
Candidatus Entotheonella factor sp. TSY1 [AZHW]
425
350
-
Ala
GGC
[ENA]
¡û
>WENV183717722
PDWJ01001458
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
957
882
-
Ala
GGC
[ENA]
¢þ
>WENV170394301
CEUC01021351
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
188
263
+
Ala
GGC
[ENA]
¢þ
>C131010901
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
2162632
2162557
-
Ala
GGC
[Ensembl]
¡û
>W1610520530
JEMA01000692
Myxococcota
Sorangium cellulosum [JEMA]
4308
4383
+
Ala
GGC
[ENA]
¡û
>W1610520640
JEMC01002732
Myxococcota
Sorangium cellulosum [JEMC]
2278
2203
-
Ala
GGC
[ENA]
¡û
>W1710616008
JEMA01000692
Myxococcota
Sorangium cellulosum [JEMA]
4308
4383
+
Ala
GGC
[ENA]
¡û
>W1710616118
JEMC01002732
Myxococcota
Sorangium cellulosum [JEMC]
2278
2203
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK