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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380077 (63 seq.)
>W1711259332
LYVF01000127
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
13617
13543
-
Gly
GCC
[ENA]
¡û
>C171098291
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
657939
658013
+
Gly
GCC
-
¡û
>C171098294
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
660778
660852
+
Gly
GCC
-
¡û
>C171098296
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
665281
665355
+
Gly
GCC
-
¡û
>C171098332
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2238306
2238232
-
Gly
GCC
-
¡û
>C018184
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
969584
969658
+
Gly
GCC
[Ensembl]
¡û
>C018196
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
1525948
1525874
-
Gly
GCC
[Ensembl]
¡û
>WENV180094586
MTBK01016194
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3812
3738
-
Gly
GCC
[ENA]
¢þ
>WENV180094719
MTBK01026868
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5562
5488
-
Gly
GCC
[ENA]
¢þ
>WENV180097608
MTBK01199734
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1285
1211
-
Gly
GCC
[ENA]
¢þ
>WENV180098089
MTBK01227307
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
607
681
+
Gly
GCC
[ENA]
¢þ
>WENV180098215
MTBK01233711
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
7262
7336
+
Gly
GCC
[ENA]
¢þ
>WENV180777790
ODIL01104637
[ODIL] human metagenome; G_DNA_Supragingival plaque
192
118
-
Gly
GCC
[ENA]
¢þ
>WENV180789235
ODIS01345544
[ODIS] human metagenome; G_DNA_Supragingival plaque
98
24
-
Gly
GCC
[ENA]
¢þ
>WENV180814800
ODJO01057288
[ODJO] human metagenome; G_DNA_Supragingival plaque
561
487
-
Gly
GCC
[ENA]
¢þ
>WENV180935147
ODTS01076442
[ODTS] human metagenome; G_DNA_Subgingival plaque
255
181
-
Gly
GCC
[ENA]
¢þ
>WENV180991320
ODVN01044169
[ODVN] human metagenome; G_DNA_Tongue dorsum
46
120
+
Gly
GCC
[ENA]
¢þ
>WENV181004251
ODVX01187288
[ODVX] human metagenome; G_DNA_Supragingival plaque
144
70
-
Gly
GCC
[ENA]
¢þ
>WENV181141869
OEGT01028461
[OEGT] human metagenome; G_DNA_Throat
411
485
+
Gly
GCC
[ENA]
¢þ
>WENV181182808
OEJV01050744
[OEJV] human metagenome; G_DNA_Supragingival plaque
168
242
+
Gly
GCC
[ENA]
¢þ
>WENV181231624
OFEK01043341
[OFEK] activated sludge metagenome; Anaerobic digester
524
450
-
Gly
GCC
[ENA]
¢þ
>WENV170643945
JMBV01012433
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
339
265
-
Gly
GCC
[ENA]
¢þ
>WENV170716514
LSQX01002080
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
114
188
+
Gly
GCC
[ENA]
¢þ
>WENV170720117
LSQX01141829
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
28509
28583
+
Gly
GCC
[ENA]
¢þ
>WENV170722503
LSQX01232296
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
42790
42716
-
Gly
GCC
[ENA]
¢þ
>WENV170725440
LSQX01342504
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
114
188
+
Gly
GCC
[ENA]
¢þ
>W1810721329
QNRX01000001
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
28961
28887
-
Gly
GCC
[ENA]
¡û
>W1810721350
QNRX01000008
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
58520
58594
+
Gly
GCC
[ENA]
¡û
>C11109009
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
760281
760207
-
Gly
GCC
[Ensembl]
¡û
>W121007214
AFZG01000002
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
116394
116320
-
Gly
GCC
[ENA]
¡û
>W1610039924
AZTB01000027
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
10898
10824
-
Gly
GCC
[ENA]
¡û
>W1610039946
AZTB01000130
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
965
891
-
Gly
GCC
[ENA]
¡û
>W1610073861
BCWE01000004
Bacillota
Desulfolucanica intricata intricatum [BCWE]
85472
85546
+
Gly
GCC
[ENA]
¡û
>W1610073905
BCWE01000026
Bacillota
Desulfolucanica intricata intricatum [BCWE]
9655
9581
-
Gly
GCC
[ENA]
¡û
>W1610073925
BCWE01000066
Bacillota
Desulfolucanica intricata intricatum [BCWE]
258
184
-
Gly
GCC
[ENA]
¡û
>W1611021421
LYVF01000127
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
13617
13543
-
Gly
GCC
[ENA]
¡û
>W1710037069
AZTB01000027
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
10898
10824
-
Gly
GCC
[ENA]
¡û
>W1710037091
AZTB01000130
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
965
891
-
Gly
GCC
[ENA]
¡û
>W1710070979
BCWE01000004
Bacillota
Desulfolucanica intricata intricatum [BCWE]
85472
85546
+
Gly
GCC
[ENA]
¡û
>W1710071023
BCWE01000026
Bacillota
Desulfolucanica intricata intricatum [BCWE]
9655
9581
-
Gly
GCC
[ENA]
¡û
>W1710071043
BCWE01000066
Bacillota
Desulfolucanica intricata intricatum [BCWE]
258
184
-
Gly
GCC
[ENA]
¡û
>W1710083597
BDJL01000019
Bacillota
Carboxydothermus islandicus [BDJL]
66373
66447
+
Gly
GCC
[ENA]
¡û
>W1710083624
BDJL01000141
Bacillota
Carboxydothermus islandicus [BDJL]
20971
21045
+
Gly
GCC
[ENA]
¡û
>W1710084318
BDLQ01000016
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
14193
14267
+
Gly
GCC
[ENA]
¡û
>W1710084332
BDLQ01000021
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
17423
17497
+
Gly
GCC
[ENA]
¡û
>W1710084341
BDLQ01000021
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
121563
121637
+
Gly
GCC
[ENA]
¡û
>W1710084354
BDLQ01000058
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
64744
64818
+
Gly
GCC
[ENA]
¡û
>W1710084389
BDLR01000034
Bacillota
Carboxydocella sp. JDF658 [BDLR]
24999
24925
-
Gly
GCC
[ENA]
¡û
>W1710084401
BDLR01000037
Bacillota
Carboxydocella sp. JDF658 [BDLR]
14184
14258
+
Gly
GCC
[ENA]
¡û
>W1710084415
BDLR01000060
Bacillota
Carboxydocella sp. JDF658 [BDLR]
35379
35305
-
Gly
GCC
[ENA]
¡û
>W1710084434
BDLR01000181
Bacillota
Carboxydocella sp. JDF658 [BDLR]
17315
17389
+
Gly
GCC
[ENA]
¡û
>W1710574776
FOYM01000001
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
274286
274212
-
Gly
GCC
[ENA]
¡û
>W1710574779
FOYM01000001
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
266913
266839
-
Gly
GCC
[ENA]
¡û
>W1710582291
FQTU01000003
Bacillota
Alkalibacter saccharofermentans DSM 14828 [FQTU]
10751
10825
+
Gly
GCC
[ENA]
¡û
>W1710582300
FQTU01000010
Bacillota
Alkalibacter saccharofermentans DSM 14828 [FQTU]
42636
42710
+
Gly
GCC
[ENA]
¡û
>W1710586121
FQWY01000012
Bacillota
Thermosyntropha lipolytica DSM 11003 [FQWY]
14874
14948
+
Gly
GCC
[ENA]
¡û
>W1710586919
FQXO01000058
Bacillota
Caloranaerobacter azorensis DSM 13643 [FQXO]
8259
8333
+
Gly
GCC
[ENA]
¡û
>W1710586931
FQXO01000147
Bacillota
Caloranaerobacter azorensis DSM 13643 [FQXO]
278
352
+
Gly
GCC
[ENA]
¡û
>W1710601645
FUXM01000004
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
98473
98547
+
Gly
GCC
[ENA]
¡û
>W1710601666
FUXM01000031
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
16943
16869
-
Gly
GCC
[ENA]
¡û
>W1710601671
FUXM01000045
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
172
246
+
Gly
GCC
[ENA]
¡û
>W1710601680
FUXM01000055
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
11575
11501
-
Gly
GCC
[ENA]
¡û
>W1710601690
FUXM01000061
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
111
37
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK