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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380734 (30 seq.)
>W1710860333
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2599763
2599838
+
Asn
GTT
[ENA]
¡û
>W1710870327
LMKK01000003
Actinomycetota
Agreia sp. Leaf210 [LMKK]
480757
480832
+
Asn
GTT
[ENA]
¡û
>W1710921182
LNZG01000046
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
14621
14694
+
Asn
GTT
[ENA]
¡û
>W131249973
CAUF01000104
Actinomycetota
Tropheryma whipplei str. Art1 [CAUF]
66733
66806
+
Asn
GTT
[ENA]
¡û
>W131250492
CAUS010000084
Actinomycetota
Tropheryma whipplei str. Endo27 [CAUS]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250784
CAVA010000084
Actinomycetota
Tropheryma whipplei str. DigMusc17 [CAVA]
66733
66806
+
Asn
GTT
[ENA]
¡û
>C025995
BX072543
Actinomycetota
Tropheryma whipplei [BX072543]
521921
521849
-
Asn
GTT
[Ensembl]
¡û
>WENV180354107
OBLQ011383045
[OBLQ] soil metagenome; soil
121
194
+
Asn
GTT
[ENA]
¢þ
>WENV181222866
OFDC01000430
[OFDC] hot springs metagenome; Water
2512
2587
+
Asn
GTT
[ENA]
¢þ
>C181001460
AP017315
Actinomycetota
Microcella alkaliphila JAM AC0309 [AP017315]
1653320
1653245
-
Asn
GTT
-
¡û
>W1910857552
NBXA01000021
Actinomycetota
Subtercola boreus P27444 [NBXA]
271098
271171
+
Asn
GTT
[ENA]
¡û
>W1910857597
NBXB01000027
Actinomycetota
Subtercola boreus P27479 [NBXB]
287570
287643
+
Asn
GTT
[ENA]
¡û
>W1910857642
NBXC01000015
Actinomycetota
Subtercola boreus P27924 [NBXC]
88269
88342
+
Asn
GTT
[ENA]
¡û
>W1910857685
NBXD01000016
Actinomycetota
Subtercola boreus P27979 [NBXD]
58677
58750
+
Asn
GTT
[ENA]
¡û
>W1910857728
NBXE01000020
Actinomycetota
Subtercola boreus P28004 [NBXE]
88256
88329
+
Asn
GTT
[ENA]
¡û
>W1911497883
OCST01000003
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
479730
479803
+
Asn
GTT
[ENA]
¡û
>W1911685505
QKTL01000005
Actinomycetota
Curtobacterium sp. MCBD17_040 [QKTL]
40141
40214
+
Asn
GTT
[ENA]
¡û
>W1911685693
QKTP01000003
Actinomycetota
Curtobacterium sp. MCBD17_003 [QKTP]
332058
331985
-
Asn
GTT
[ENA]
¡û
>W1911783420
QXTG01000002
Actinomycetota
Amnibacterium setariae DD4a [QXTG]
805752
805678
-
Asn
GTT
[ENA]
¡û
>W1810281974
PSXW01000003
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
185782
185709
-
Asn
GTT
[ENA]
¡û
>W1810577928
QEOP01000002
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
589410
589483
+
Asn
GTT
[ENA]
¡û
>W1810684457
QKXI01000007
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
224914
224837
-
Asn
GTT
[ENA]
¡û
>W1511399897
JTGD01000028
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
71971
72046
+
Asn
GTT
[ENA]
¡û
>W1610069743
BCST01000001
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
67614
67689
+
Asn
GTT
[ENA]
¡û
>W1610722679
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2599763
2599838
+
Asn
GTT
[ENA]
¡û
>W1610732673
LMKK01000003
Actinomycetota
Agreia sp. Leaf210 [LMKK]
480757
480832
+
Asn
GTT
[ENA]
¡û
>W1710067116
BCST01000001
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
67614
67689
+
Asn
GTT
[ENA]
¡û
>W1710540793
FNXD01000005
Actinomycetota
Leifsonia sp. CL154 [FNXD]
105534
105461
-
Asn
GTT
[ENA]
¡û
>W1710608529
FXAY01000003
Actinomycetota
Agreia pratensis [FXAY]
289512
289587
+
Asn
GTT
[ENA]
¡û
>W1710609304
FXWI01000002
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
376823
376748
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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