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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380796 (89 seq.)
>W1710934493
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
161442
161367
-
Phe
GAA
[ENA]
¡û
>W1711033616
LRHZ01000034
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
7134
7059
-
Phe
GAA
[ENA]
¡û
>W1711033621
LRHZ01000055
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
2730
2805
+
Phe
GAA
[ENA]
¡û
>W1711033656
LRIA01000091
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
187
112
-
Phe
GAA
[ENA]
¡û
>W1711033670
LRIA01000113
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
22192
22267
+
Phe
GAA
[ENA]
¡û
>W1711149146
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
954403
954328
-
Phe
GAA
[ENA]
¡û
>W1711272417
LZFI01000001
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
15470
15395
-
Phe
GAA
[ENA]
¡û
>W1711281977
LZMQ01000002
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
68317
68392
+
Phe
GAA
[ENA]
¡û
>W1711282012
LZMR01000001
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
3667
3592
-
Phe
GAA
[ENA]
¡û
>W1711301919
MAIK01000480
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
62
137
+
Phe
GAA
[ENA]
¡û
>W1711395034
MESR01000253
Betaproteobacteria
Burkholderiales bacterium RIFOXYD2_FULL_59_8 [MESR]
7313
7388
+
Phe
GAA
[ENA]
¡û
>W1711625798
MPIY01000017
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
129216
129141
-
Phe
GAA
[ENA]
¡û
>W1711932795
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
345020
344945
-
Phe
GAA
[ENA]
¡û
>W1712004559
NEGY01000052
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
20284
20359
+
Phe
GAA
[ENA]
¡û
>W1712004560
NEGY01000052
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
31718
31793
+
Phe
GAA
[ENA]
¡û
>W1712004806
NEHB01000041
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
20284
20359
+
Phe
GAA
[ENA]
¡û
>W1712004807
NEHB01000041
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
31718
31793
+
Phe
GAA
[ENA]
¡û
>C018620
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
3992132
3992057
-
Phe
GAA
[Ensembl]
¡û
>WENV180018273
FSYV01000106
[FSYV] metagenome; soil
4860
4935
+
Phe
GAA
[ENA]
¢þ
>WENV180022345
FTFY01001180
[FTFY] metagenome; soil
2945
2870
-
Phe
GAA
[ENA]
¢þ
>WENV180038397
FZPU01000108
[FZPU] metagenome; underground water
4911
4986
+
Phe
GAA
[ENA]
¢þ
>WENV180039223
LLBY010037936
[LLBY] soil metagenome; soil from tomato rhizosphere
1433
1358
-
Phe
GAA
[ENA]
¢þ
>WENV180252088
OBEQ010417518
[OBEQ] groundwater metagenome; groundwater
3
78
+
Phe
GAA
[ENA]
¢þ
>WENV180256593
OBEQ010834016
[OBEQ] groundwater metagenome; groundwater
10
85
+
Phe
GAA
[ENA]
¢þ
>WENV180259748
OBEQ011135738
[OBEQ] groundwater metagenome; groundwater
226
301
+
Phe
GAA
[ENA]
¢þ
>WENV180259970
OBEQ011157637
[OBEQ] groundwater metagenome; groundwater
506
581
+
Phe
GAA
[ENA]
¢þ
>WENV180270085
OBEQ012130789
[OBEQ] groundwater metagenome; groundwater
473
548
+
Phe
GAA
[ENA]
¢þ
>WENV181368847
OFQN01001559
[OFQN] freshwater metagenome; Freshwater Lake
768
693
-
Phe
GAA
[ENA]
¢þ
>WENV181369263
OFQP01000038
[OFQP] freshwater metagenome; Freshwater Lake
26109
26184
+
Phe
GAA
[ENA]
¢þ
>WENV181374414
OFQY01007173
[OFQY] wastewater metagenome; Exp Tend VB 10WW
1267
1192
-
Phe
GAA
[ENA]
¢þ
>WENV181849097
OGVZ01053402
[OGVZ] freshwater metagenome; freshwater
158
233
+
Phe
GAA
[ENA]
¢þ
>WENV181851021
OGWE01005693
[OGWE] freshwater metagenome; freshwater
750
825
+
Phe
GAA
[ENA]
¢þ
>W141258906
CBXX010000014
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
84762
84837
+
Phe
GAA
[ENA]
¡û
>WENV183734592
PJTZ01022196
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
334
409
+
Phe
GAA
[ENA]
¢þ
>WENV170555499
CXWL01000804
[CXWL] groundwater metagenome; biofilm material
1229
1154
-
Phe
GAA
[ENA]
¢þ
>WENV170557865
CXWL01040706
[CXWL] groundwater metagenome; biofilm material
511
436
-
Phe
GAA
[ENA]
¢þ
>WENV170558001
CXWL01045973
[CXWL] groundwater metagenome; biofilm material
96
171
+
Phe
GAA
[ENA]
¢þ
>WENV170558336
CXWL01064468
[CXWL] groundwater metagenome; biofilm material
49177
49102
-
Phe
GAA
[ENA]
¢þ
>WENV170559216
CXWL01114660
[CXWL] groundwater metagenome; biofilm material
553
478
-
Phe
GAA
[ENA]
¢þ
>WENV170559217
CXWL01114737
[CXWL] groundwater metagenome; biofilm material
4160
4085
-
Phe
GAA
[ENA]
¢þ
>WENV170559271
CXWL01117227
[CXWL] groundwater metagenome; biofilm material
18346
18271
-
Phe
GAA
[ENA]
¢þ
>WENV170559360
CXWL01120215
[CXWL] groundwater metagenome; biofilm material
5538
5613
+
Phe
GAA
[ENA]
¢þ
>WENV170559666
CXWL01135672
[CXWL] groundwater metagenome; biofilm material
1369
1444
+
Phe
GAA
[ENA]
¢þ
>WENV170961413
MLJW01000029
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
128337
128262
-
Phe
GAA
[ENA]
¢þ
>WENV170961478
MLJW01000067
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
115385
115460
+
Phe
GAA
[ENA]
¢þ
>C181081170
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
1013872
1013797
-
Phe
GAA
-
¡û
>C181081171
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
1001216
1001141
-
Phe
GAA
-
¡û
>C181187681
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1595022
1594947
-
Phe
GAA
-
¡û
>C181218954
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
1626472
1626397
-
Phe
GAA
-
¡û
>C181218993
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1477432
1477357
-
Phe
GAA
-
¡û
>C181219074
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
626732
626657
-
Phe
GAA
-
¡û
>C181219099
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1498004
1497929
-
Phe
GAA
-
¡û
>W1910942178
NJGG01000001
Betaproteobacteria
Polynucleobacter cosmopolitanus MWH-MoIso2 [NJGG]
384309
384234
-
Phe
GAA
[ENA]
¡û
>W1911490752
OANS01000003
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
13176
13101
-
Phe
GAA
[ENA]
¡û
>W1911802788
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3128752
3128827
+
Phe
GAA
[ENA]
¡û
>W1911802867
QYUP01000128
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
2683
2608
-
Phe
GAA
[ENA]
¡û
>W1810068176
PDZI01000008
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
22961
23036
+
Phe
GAA
[ENA]
¡û
>W1810068177
PDZI01000008
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
33287
33362
+
Phe
GAA
[ENA]
¡û
>W1810068483
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
608787
608712
-
Phe
GAA
[ENA]
¡û
>W1810068484
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
595650
595575
-
Phe
GAA
[ENA]
¡û
>W1810068605
PDZN01000032
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
48381
48306
-
Phe
GAA
[ENA]
¡û
>W1810068606
PDZN01000032
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
38775
38700
-
Phe
GAA
[ENA]
¡û
>W1810068656
PDZO02000013
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
23139
23214
+
Phe
GAA
[ENA]
¡û
>W1810068657
PDZO02000013
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
33465
33540
+
Phe
GAA
[ENA]
¡û
>W1810069783
PEBS01000062
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
22463
22538
+
Phe
GAA
[ENA]
¡û
>W1810069784
PEBS01000062
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
32113
32188
+
Phe
GAA
[ENA]
¡û
>W1810071269
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2380170
2380245
+
Phe
GAA
[ENA]
¡û
>W1810071270
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2391975
2392050
+
Phe
GAA
[ENA]
¡û
>W1810072762
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
1947193
1947268
+
Phe
GAA
[ENA]
¡û
>W1810072763
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
1959058
1959133
+
Phe
GAA
[ENA]
¡û
>W1810576829
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
1015948
1015873
-
Phe
GAA
[ENA]
¡û
>W1810576830
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
1004130
1004055
-
Phe
GAA
[ENA]
¡û
>W1810699164
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
355826
355751
-
Phe
GAA
[ENA]
¡û
>C151025660
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
2005052
2004977
-
Phe
GAA
[Ensembl]
¡û
>W1511683821
LFLT01000003
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
180809
180884
+
Phe
GAA
[ENA]
¡û
>W1511683860
LFLU01000002
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
346695
346620
-
Phe
GAA
[ENA]
¡û
>C161053593
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
5003440
5003515
+
Phe
GAA
[Ensembl]
¡û
>W121086379
AKJW01000058
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
142621
142546
-
Phe
GAA
[ENA]
¡û
>W1610163442
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1684951
1684876
-
Phe
GAA
[ENA]
¡û
>W1610163443
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1684793
1684718
-
Phe
GAA
[ENA]
¡û
>W1610792024
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
161442
161367
-
Phe
GAA
[ENA]
¡û
>W1611052759
MAIK01000480
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
62
137
+
Phe
GAA
[ENA]
¡û
>W1710165109
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1684951
1684876
-
Phe
GAA
[ENA]
¡û
>W1710165110
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1684793
1684718
-
Phe
GAA
[ENA]
¡û
>W1710517038
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
22238
22313
+
Phe
GAA
[ENA]
¡û
>W1710517039
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
34054
34129
+
Phe
GAA
[ENA]
¡û
>W1710556782
FOKL01000015
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
23283
23358
+
Phe
GAA
[ENA]
¡û
>W1710556783
FOKL01000015
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
34061
34136
+
Phe
GAA
[ENA]
¡û
>W1710557535
FOLC01000009
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
84413
84488
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK