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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381718 (50 seq.)
>W1710852978
LLWF02000001
Alphaproteobacteria
Roseomonas mucosa [LLWF]
110134
110060
-
Gly
CCC
[ENA]
¡û
>W1710893521
LNEV01000012
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
69288
69362
+
Gly
CCC
[ENA]
¡û
>W1711262655
LYXZ01000020
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
173804
173730
-
Gly
CCC
[ENA]
¡û
>W1711386716
MEFR01000083
Alphaproteobacteria
Acetobacteraceae bacterium SCN 69-10 [MEFR]
5109
5035
-
Gly
CCC
[ENA]
¡û
>W1711407964
MGLI01000148
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
4737
4663
-
Gly
CCC
[ENA]
¡û
>W1711505910
MKVY01000029
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
103381
103307
-
Gly
CCC
[ENA]
¡û
>W1712104549
NIPU01000014
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
261183
261109
-
Gly
CCC
[ENA]
¡û
>W1712104584
NIPV01000011
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
74452
74526
+
Gly
CCC
[ENA]
¡û
>W1712104645
NIPW01000028
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
1315
1241
-
Gly
CCC
[ENA]
¡û
>W1712104660
NIPX01000002
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
201035
201109
+
Gly
CCC
[ENA]
¡û
>C171039581
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1101178
1101104
-
Gly
CCC
-
¡û
>WENV180018803
FTAI01001793
[FTAI] metagenome; soil
9230
9156
-
Gly
CCC
[ENA]
¢þ
>WENV181223351
OFDC01008305
[OFDC] hot springs metagenome; Water
2093
2019
-
Gly
CCC
[ENA]
¢þ
>WENV181227571
OFDN01018522
[OFDN] hot springs metagenome; Water
2093
2019
-
Gly
CCC
[ENA]
¢þ
>W08010851
ABRU01000057
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
26144
26073
-
Gly
CCC
[ENA]
¡û
>WENV181307989
OFIS01000084
[OFIS] sludge metagenome; sludge
76135
76061
-
Gly
CCC
[ENA]
¢þ
>WENV181411618
OGCI01034659
[OGCI] hot springs metagenome; Hot spring water
820
894
+
Gly
CCC
[ENA]
¢þ
>W141220747
AZYE01000026
Alphaproteobacteria
Microvirga lupini [AZYE]
16042
15968
-
Gly
CCC
[ENA]
¡û
>W141276614
JADY01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
565105
565179
+
Gly
CCC
[ENA]
¡û
>W141276735
JAEA01000010
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
215075
215149
+
Gly
CCC
[ENA]
¡û
>WENV183664679
ORJL010398953
[ORJL] groundwater metagenome; groundwater
4754
4828
+
Gly
CCC
[ENA]
¢þ
>WENV183674455
ORJL011391172
[ORJL] groundwater metagenome; groundwater
3
77
+
Gly
CCC
[ENA]
¢þ
>WENV183724234
PJQE01002829
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
1603
1529
-
Gly
CCC
[ENA]
¢þ
>C181020322
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
1700981
1700907
-
Gly
CCC
-
¡û
>C181102022
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
1661462
1661536
+
Gly
CCC
-
¡û
>C181179120
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
3572803
3572729
-
Gly
CCC
-
¡û
>C191118885
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
1214065
1214139
+
Gly
CCC
-
¡û
>C191144267
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
1552453
1552379
-
Gly
CCC
-
¡û
>W141558714
JHWD01000004
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
146574
146648
+
Gly
CCC
[ENA]
¡û
>W141712439
JMQR01000026
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
9569
9495
-
Gly
CCC
[ENA]
¡û
>W141779220
JONP01000022
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
84038
84112
+
Gly
CCC
[ENA]
¡û
>W141816687
JQKB01000013
Alphaproteobacteria
Belnapia moabensis DSM 16746 [JQKB]
26305
26379
+
Gly
CCC
[ENA]
¡û
>W1911653588
QDGA01000037
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
664
590
-
Gly
CCC
[ENA]
¡û
>W1810273186
PSNV01000026
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
10848
10774
-
Gly
CCC
[ENA]
¡û
>W1810325513
PUEJ01000009
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
284582
284508
-
Gly
CCC
[ENA]
¡û
>W1810397223
PYDU01000041
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
11270
11344
+
Gly
CCC
[ENA]
¡û
>W1810534727
QDAH01000017
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
26939
26865
-
Gly
CCC
[ENA]
¡û
>W1810605118
QGNA01000001
Alphaproteobacteria
Falsiroseomonas bella CQN31 [QGNA]
431472
431546
+
Gly
CCC
[ENA]
¡û
>W1810692329
QLIX01000005
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
260061
259987
-
Gly
CCC
[ENA]
¡û
>W1810763431
QQBB01000007
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
314100
314174
+
Gly
CCC
[ENA]
¡û
>C161040211
CP012156
Alphaproteobacteria
Hyphomonadaceae bacterium UKL13-1 [CP012156]
2548748
2548674
-
Gly
CCC
-
¡û
>C161047031
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
1091120
1091194
+
Gly
CCC
[Ensembl]
¡û
>W121113845
ALOX01000040
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
28697
28623
-
Gly
CCC
[ENA]
¡û
>W1610716132
LLWF01000090
Alphaproteobacteria
Roseomonas mucosa [LLWF]
21390
21316
-
Gly
CCC
[ENA]
¡û
>W1610753787
LNEV01000012
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
69288
69362
+
Gly
CCC
[ENA]
¡û
>W1611024522
LYXZ01000020
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
173804
173730
-
Gly
CCC
[ENA]
¡û
>W1710507595
FMVJ01000020
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
1042
968
-
Gly
CCC
[ENA]
¡û
>W1710513118
FMZX01000019
Alphaproteobacteria
Belnapia rosea [FMZX]
58373
58447
+
Gly
CCC
[ENA]
¡û
>W1710567289
FOSQ01000001
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
873192
873266
+
Gly
CCC
[ENA]
¡û
>W1710588266
FQZF01000002
Alphaproteobacteria
Roseomonas rosea [FQZF]
337489
337563
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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