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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382584 (77 seq.)
>W1710797283
LJSX01000029
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
14827
14901
+
Val
CAC
[ENA]
¡û
>W1711179405
LWHQ01000013
Alphaproteobacteria
Methylobacterium platani [LWHQ]
18143
18217
+
Val
CAC
[ENA]
¡û
>W1711179406
LWHQ01000013
Alphaproteobacteria
Methylobacterium platani [LWHQ]
18344
18418
+
Val
CAC
[ENA]
¡û
>W1711589390
MOEC01000018
Alphaproteobacteria
Brucella cytisi [MOEC]
41043
41117
+
Val
CAC
[ENA]
¡û
>PL171001718
FQ311869
Alphaproteobacteria
Azospirillum lipoferum 4B plasmid:AZO_p1
463242
463316
+
Val
CAC
[ENA]
¡û
>C171074282
CP018171
Alphaproteobacteria
Aquibium oceanicum B7 [CP018171]
2461843
2461769
-
Val
CAC
-
¡û
>W131043744
AMPS01000027
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
41362
41288
-
Val
CAC
[ENA]
¡û
>W141065491
AQPH01000029
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
21446
21372
-
Val
CAC
[ENA]
¡û
>WENV181172893
OEIV011049409
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
97
171
+
Val
CAC
[ENA]
¢þ
>WENV181234022
OFET01000921
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
2887
2813
-
Val
CAC
[ENA]
¢þ
>W08006124
ABIP01000001
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
237977
237906
-
Val
CAC
[ENA]
¡û
>W141190308
AYOD01000002
Alphaproteobacteria
Aliihoeflea sp. 2WW [AYOD]
87452
87526
+
Val
CAC
[ENA]
¡û
>W141220780
AZYE01001819
Alphaproteobacteria
Microvirga lupini [AZYE]
35729
35655
-
Val
CAC
[ENA]
¡û
>W141241683
CAHM01000074
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
30363
30289
-
Val
CAC
[ENA]
¡û
>W141276717
JAEA01000005
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
27355
27429
+
Val
CAC
[ENA]
¡û
>WENV183736434
PJUC01003366
[PJUC] soil metagenome; Soil enriched on filter paper
1448
1522
+
Val
CAC
[ENA]
¢þ
>WENV183748732
PPFU01073712
[PPFU] hypolithon metagenome; Antarctic Hypolithon
472
398
-
Val
CAC
[ENA]
¢þ
>W141428563
JENZ01000004
Alphaproteobacteria
Brucella anthropi [JENZ]
272243
272169
-
Val
CAC
[ENA]
¡û
>WENV170574484
FLYM01045498
[FLYM] hot springs metagenome; Sediment
32
106
+
Val
CAC
[ENA]
¢þ
>WENV170682945
LFIK01002972
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
924
998
+
Val
CAC
[ENA]
¢þ
>WENV170683210
LFIK01006871
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
2013
2087
+
Val
CAC
[ENA]
¢þ
>WENV171002946
NJIW01002295
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
585
511
-
Val
CAC
[ENA]
¢þ
>C181020328
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
910436
910362
-
Val
CAC
-
¡û
>C181179095
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
1171113
1171187
+
Val
CAC
-
¡û
>C181180100
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2683495
2683569
+
Val
CAC
-
¡û
>C181180101
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2683700
2683774
+
Val
CAC
-
¡û
>C191170790
CP039649
Alphaproteobacteria
Azospirillum sp. TSA2s TSA2S [CP039642, CP039645, CP039646, CP039647, CP039648, CP039649, CP039650]
688505
688431
-
Val
CAC
-
¡û
>W141779181
JONP01000001
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
116350
116276
-
Val
CAC
[ENA]
¡û
>W1910613011
LGQU01000138
Alphaproteobacteria
Azospirillum sp. TSH20 [LGQU]
28390
28464
+
Val
CAC
[ENA]
¡û
>W1910613106
LGQW01000015
Alphaproteobacteria
Azospirillum sp. TSH64 [LGQW]
3657411
3657485
+
Val
CAC
[ENA]
¡û
>W1910613166
LGQX01000025
Alphaproteobacteria
Azospirillum sp. TSH100 [LGQX]
18126
18052
-
Val
CAC
[ENA]
¡û
>W1910613365
LGRA01000021
Alphaproteobacteria
Azospirillum sp. TSO35-2 [LGRA]
1119845
1119771
-
Val
CAC
[ENA]
¡û
>W1910645927
LWHH01000004
Alphaproteobacteria
Ochrobactrum sp. 3-3 [LWHH]
300409
300335
-
Val
CAC
[ENA]
¡û
>W1911653577
QDGA01000024
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
8409
8483
+
Val
CAC
[ENA]
¡û
>W1911708563
QOWC01000055
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
31151
31077
-
Val
CAC
[ENA]
¡û
>W1911787964
QYBB01000001
Alphaproteobacteria
Lichenibacterium minor RmlP026 [QYBB]
94751
94677
-
Val
CAC
[ENA]
¡û
>W1911788015
QYBC01000002
Alphaproteobacteria
Lichenibacterium ramalinae RmlP001 [QYBC]
274922
274848
-
Val
CAC
[ENA]
¡û
>W1911802606
QYUL01000001
Alphaproteobacteria
Azospirillum cavernae K2W22B-5 [QYUL]
638087
638161
+
Val
CAC
[ENA]
¡û
>W1810058911
PDKW01000041
Alphaproteobacteria
Azospirillum palustre B2 [PDKW]
451021
451095
+
Val
CAC
[ENA]
¡û
>W1810534711
QDAH01000004
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
121059
121133
+
Val
CAC
[ENA]
¡û
>W1810607983
QGST01000011
Alphaproteobacteria
Ochrobactrum sp. POC9 [QGST]
81696
81622
-
Val
CAC
[ENA]
¡û
>W1810692328
QLIX01000005
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
96235
96309
+
Val
CAC
[ENA]
¡û
>W1810763422
QQBB01000005
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
310287
310361
+
Val
CAC
[ENA]
¡û
>W1511507894
JXOD01000157
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
3355
3429
+
Val
CAC
[ENA]
¡û
>W1511507895
JXOD01000157
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
3556
3630
+
Val
CAC
[ENA]
¡û
>W1511563280
LABX01000374
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
9674
9600
-
Val
CAC
[ENA]
¡û
>W1511563281
LABX01000374
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
9471
9397
-
Val
CAC
[ENA]
¡û
>W1511563316
LABY01000157
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
7904
7830
-
Val
CAC
[ENA]
¡û
>W1511563317
LABY01000157
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
7702
7628
-
Val
CAC
[ENA]
¡û
>W1511563381
LABZ01000178
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
15939
16013
+
Val
CAC
[ENA]
¡û
>W1511563382
LABZ01000178
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
16143
16217
+
Val
CAC
[ENA]
¡û
>W1610047412
BBDG01000813
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
928
854
-
Val
CAC
[ENA]
¡û
>W1610047413
BBDG01000813
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
727
653
-
Val
CAC
[ENA]
¡û
>W1610516189
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
706500
706426
-
Val
CAC
[ENA]
¡û
>W1610590510
LDRM01000118
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
19050
18976
-
Val
CAC
[ENA]
¡û
>W1610590511
LDRM01000118
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
18848
18774
-
Val
CAC
[ENA]
¡û
>W1610590584
LDRN01000116
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
3995
4069
+
Val
CAC
[ENA]
¡û
>W1610590585
LDRN01000116
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
4197
4271
+
Val
CAC
[ENA]
¡û
>W1610661240
LJSX01000029
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
14827
14901
+
Val
CAC
[ENA]
¡û
>W1610987306
LWHQ01000013
Alphaproteobacteria
Methylobacterium platani [LWHQ]
18143
18217
+
Val
CAC
[ENA]
¡û
>W1610987307
LWHQ01000013
Alphaproteobacteria
Methylobacterium platani [LWHQ]
18344
18418
+
Val
CAC
[ENA]
¡û
>W1710044017
BBDG01000813
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
928
854
-
Val
CAC
[ENA]
¡û
>W1710044018
BBDG01000813
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
727
653
-
Val
CAC
[ENA]
¡û
>W1710501480
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
706500
706426
-
Val
CAC
[ENA]
¡û
>W1710507551
FMVJ01000002
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
399361
399287
-
Val
CAC
[ENA]
¡û
>W1710548822
FOEB01000009
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
68398
68472
+
Val
CAC
[ENA]
¡û
>W1710548823
FOEB01000009
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
68597
68671
+
Val
CAC
[ENA]
¡û
>W1710567291
FOSQ01000001
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
1337490
1337416
-
Val
CAC
[ENA]
¡û
>W1710584202
FQVJ01000013
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
79717
79791
+
Val
CAC
[ENA]
¡û
>W1710584203
FQVJ01000013
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
79812
79886
+
Val
CAC
[ENA]
¡û
>W1710588298
FQZF01000019
Alphaproteobacteria
Roseomonas rosea [FQZF]
18243
18169
-
Val
CAC
[ENA]
¡û
>W1710607894
FXAK01000002
Alphaproteobacteria
Azospirillum oryzae [FXAK]
460127
460053
-
Val
CAC
[ENA]
¡û
>W1710609147
FXBR01000005
Alphaproteobacteria
Azospirillum lipoferum [FXBR]
1755182
1755256
+
Val
CAC
[ENA]
¡û
>W1710709790
LDRM01000118
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
19050
18976
-
Val
CAC
[ENA]
¡û
>W1710709791
LDRM01000118
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
18848
18774
-
Val
CAC
[ENA]
¡û
>W1710709864
LDRN01000116
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
3995
4069
+
Val
CAC
[ENA]
¡û
>W1710709865
LDRN01000116
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
4197
4271
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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