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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382684 (28 seq.)
>W1710934479
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
54808
54734
-
Arg
CCT
[ENA]
¡û
>W1710934511
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
251286
251212
-
Arg
CCT
[ENA]
¡û
>W1711149067
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
553682
553608
-
Arg
CCT
[ENA]
¡û
>W1711149140
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
326161
326087
-
Arg
CCT
[ENA]
¡û
>W1711272431
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
307016
306942
-
Arg
CCT
[ENA]
¡û
>W1711281998
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
424811
424737
-
Arg
CCT
[ENA]
¡û
>W1711282044
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
447315
447241
-
Arg
CCT
[ENA]
¡û
>W1711625776
MPIY01000002
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
116635
116561
-
Arg
CCT
[ENA]
¡û
>W1711932817
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
743225
743151
-
Arg
CCT
[ENA]
¡û
>W1712077029
NGUO01000010
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
124263
124337
+
Arg
CCT
[ENA]
¡û
>C171035208
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
980676
980602
-
Arg
CCT
-
¡û
>WENV180018287
FSYV01000242
[FSYV] metagenome; soil
2169
2243
+
Arg
CCT
[ENA]
¢þ
>WENV180033109
FTKD01402781
[FTKD] metagenome; soil
45918
45992
+
Arg
CCT
[ENA]
¢þ
>WENV180251183
OBEQ010347145
[OBEQ] groundwater metagenome; groundwater
1373
1299
-
Arg
CCT
[ENA]
¢þ
>WENV180391082
OBPM01007584
[OBPM] marine metagenome; ENVO:00002010
762
836
+
Arg
CCT
[ENA]
¢þ
>C181218894
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
816126
816052
-
Arg
CCT
-
¡û
>C181218910
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
657185
657259
+
Arg
CCT
-
¡û
>C181218966
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
774930
774856
-
Arg
CCT
-
¡û
>C181219004
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
623759
623685
-
Arg
CCT
-
¡û
>C181219069
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1455661
1455587
-
Arg
CCT
-
¡û
>C181219112
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
539491
539417
-
Arg
CCT
-
¡û
>W1911490733
OANS01000002
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
316610
316684
+
Arg
CCT
[ENA]
¡û
>W1810101996
PGTX01000001
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
91760
91686
-
Arg
CCT
[ENA]
¡û
>C151025665
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
965614
965540
-
Arg
CCT
[Ensembl]
¡û
>WENV057991
AACY023313913
Marine microbial communities from Global Ocean Sampling (GOS)
323
399
+
Arg
CCT
[ENA]
>WENV058098
AACY023317464
Marine microbial communities from Global Ocean Sampling (GOS)
500
574
+
Arg
CCT
[ENA]
>W1610792010
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
54808
54734
-
Arg
CCT
[ENA]
¡û
>W1610792042
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
251286
251212
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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